Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1723 95.1 2e-14 seq1796 89.7 8e-13 >seq1723 Length=56463 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || || || | || | ||| || Sbjct 44044 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTGGAATCATCC 44103 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| |||| || ||||| || ||||| || ||||| || |||||||| Sbjct 44104 GACACCATCGATAACGTTAAGGCA-AAAATCCAGGATAAGGAGGGTATCCCCCCTGATCA 44162 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || || || || ||||| ||| | || ||| |||| || | ||||| || Sbjct 44163 ACAACGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAA 44222 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || || ||||| || | || | ||| | ||| | || |||||||| ||| ||| Sbjct 44223 CATCCAGAAGGAATCCACCCTTCACCTCGTTCTGCGTCTGCGTGGTGGTATGCAAATATT 44282 Query 124777 C 124777 | Sbjct 44283 C 44283 >seq1796 Length=58898 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || || ||| | || | ||| || Sbjct 51723 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAATCATCC 51664 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| |||| || || ||||| ||||| || ||||| || |||||||| Sbjct 51663 GACACCATCGATAACGTTAAGGCA-AAGATTCAGGATAAGGAGGGTATCCCCCCTGATCA 51605 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || || ||||| ||||| ||| | || ||| |||| || | ||||| || Sbjct 51604 ACAACGTCTGATCTTTGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAA 51545 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || | || | ||| | || ||||| || Sbjct 51544 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCTGCGTCTGCGTGGTGGCAT 51494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755371776099200