Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1723 107 2e-18 seq1796 105 8e-18 seq557 100 3e-16 >seq1723 Length=56463 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||| || || | || || |||||||| || ||||| Sbjct 44463 CTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 44404 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | | |||||| ||| ||| || || | ||| Sbjct 44403 AATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCA-CGT 44345 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | ||||||||| || ||||| || ||||| | Sbjct 44344 TGTCGATCGTGTCTGATGACTCGACCTCCAACGTGATGGTCTTACCCGTGAGGGTCTTGA 44285 Query 43171 CAAAGATTTGCAT 43183 | || |||||||| Sbjct 44284 CGAATATTTGCAT 44272 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| | ||||| || | || || || ||||| || ||||| Sbjct 44234 TCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCGAAG 44175 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || || || || | || | | |||||| ||| ||||||| || | | Sbjct 44174 ATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGGATTTTTGCCTTAACGTTA 44115 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| |||||||| |||| ||||| || ||||| || || ||||| ||| Sbjct 44114 TCGATGGTGTCGGATGATTCCACTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACA 44055 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 44054 AAGATTTGCAT 44044 >seq1796 Length=58898 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | ||| || || |||| || |||||||| || ||||| Sbjct 51305 TCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCGGCGAAA 51364 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||||| || | | |||||| ||| ||| || |||| ||| Sbjct 51365 ATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGA-CGTT 51423 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || || | ||| || || || ||||| || || || || Sbjct 51424 GTCGATCGTGTCTGATGACTCGACCTCCAACGTAATAGTCTTACCCGTGAGGGTTTTGAC 51483 Query 43172 AAAGATTTGCAT 43183 ||| |||||||| Sbjct 51484 AAATATTTGCAT 51495 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||||| || | || || || ||||| || || || Sbjct 51532 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCAAA 51591 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || || || || | || | | |||||| ||| ||| | |||| | | ||| Sbjct 51592 GATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCC-TGAATCTTTGCCTTAACGT 51650 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | |||||| |||||||| |||| ||||| || ||||| || || ||||| | Sbjct 51651 TATCGATGGTGTCGGATGATTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCA 51710 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 51711 CAAAGATTTGCAT 51723 >seq557 Length=42797 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 42976 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 43035 |||| || | ||||||||||| || || || ||||| | || || || |||| || | Sbjct 23692 CCAAGTGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAA 23751 Query 43036 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 43095 ||||||| || ||||| ||||| ||||| ||||||| || | | ||||||||| || Sbjct 23752 GCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGA 23811 Query 43096 TTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 | || || | | | | ||||||| || || || || | || ||||| || | Sbjct 23812 TCTTCGCCTTAACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTAC 23871 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || ||||| ||||| Sbjct 23872 CCGTGAGGGTCTTGACGAAGATCTGCAT 23899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571753849485320