Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1739 105 1e-17 seq2085 93.3 9e-14 >seq1739 Length=117728 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || ||||||| || || || || || ||| |||| || Sbjct 52740 CAGCACATGATCATGCGTGTCTCTGTCGGCATCCATGGCGAGGATATCGAGCGCGTCATC 52681 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| |||| || |||| | || ||||| |||| || || |||||| Sbjct 52680 GAGACATACAATCTAATGTCCGAGCGCTACTTCACGCATGCTTCACCTACACTGTTCAAC 52621 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||||||| |||| || || || |||||||| || | |||| |||||||||| Sbjct 52620 GCCGGTACCCCCAACCCCCAACTTAGTTCGTGCTTCCTCGTGTGCATGAAAGACGACTCG 52561 Query 249073 GTCGACGGCATTTATGACACGCTTAA 249098 |||| ||||| || || || || || Sbjct 52560 ATCGAGGGCATCTACGATACTCTCAA 52535 >seq2085 Length=44481 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || ||||||| || || || || || ||| |||| || Sbjct 24171 CAGCACATGATCATGCGTGTCTCTGTCGGCATCCATGGCGAGGATATCGAGCGCGTCATC 24112 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| | |||| || |||| | || ||||| |||| || | |||||| Sbjct 24111 GAGACATACAACTTAATGTCCGAGCGCTACTTCACGCATGCTTCACCTACATTATTCAAC 24052 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 |||||||| ||| ||||| || || ||||| || | ||| |||||||||| Sbjct 24051 GCCGGTACACCAAACCCCCAGCTCAGTTCATGCTTCCTCGTGTGTATGAAAGACGACTCA 23992 Query 249073 GTCGACGGCATTTATGACACGCTTAA 249098 |||| ||||| || || || || || Sbjct 23991 ATCGAGGGCATCTACGATACCCTCAA 23966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073643695680192