Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq557 127 2e-24 seq2729 118 8e-22 seq1723 116 3e-21 seq1796 111 1e-19 >seq557 Length=42797 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||||||| || |||||||||||||| ||||| || ||| ||| |||| |||| || | Sbjct 23692 CCAAGTGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAA 23751 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || |||||||| || | |||||||||||||| || | |||||||||||| | Sbjct 23752 GCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGA 23811 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | |||| ||| ||||||| |||||| ||||| | Sbjct 23812 TCTTCGCCTTAACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTAC 23871 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || ||||| || ||||| ||||| Sbjct 23872 CCGTGAGGGTCTTGACGAAGATCTGCAT 23899 >seq2729 Length=38494 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||||||| || || ||||||||||| || |||||||| || |||| |||| || | Sbjct 369 CCAAGTGAAGGGTACTCTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAA 310 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| ||||| || | |||||||||||||| || | ||| ||||||||| | Sbjct 309 GCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGA 250 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | |||| ||| ||||||| ||| |||||||| | Sbjct 249 TCTTCGCCTTGACATTATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTTAC 190 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||||| || ||||| ||||| Sbjct 189 CCGTGAGAGTCTTGACGAAGATCTGCAT 162 >seq1723 Length=56463 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||| || || |||| | || || ||||| Sbjct 44247 GTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTG 44188 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| |||| || ||||| || || || | ||||||||| ||| ||||| Sbjct 44187 CTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGGATTTT 44128 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | |||| ||||| || | ||| ||||||||||| || Sbjct 44127 TGCCTTAACGTTATCGATGGTGTCGGATGATTCCACTTCGAGGGTGATCGTCTTGCCGGT 44068 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||||||||| Sbjct 44067 GAGGGTCTTCACAAAGATTTGCAT 44044 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| ||| ||| | || || || || ||||||||||| Sbjct 44463 CTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 44404 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||||||||| | ||||||||| ||| || || ||| || Sbjct 44403 AATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACGTT 44344 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| ||||||| || || ||||| ||||| || ||||| || Sbjct 44343 GTCGATCGTGTCTGATGACTCGACCTCCAACGTGATGGTCTTACCCGTGAGGGTCTTGAC 44284 Query 45325 AAAGATTTGCAT 45336 || |||||||| Sbjct 44283 GAATATTTGCAT 44272 >seq1796 Length=58898 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||| || || |||| | || || ||||| Sbjct 51520 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTG 51579 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||||| || |||| || ||||| || || || | ||||||||| ||| ||| || Sbjct 51580 CTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGAATCTT 51639 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | |||| ||||| || | || ||||||||||| || Sbjct 51640 TGCCTTAACGTTATCGATGGTGTCGGATGATTCCACTTCGAGAGTGATCGTCTTGCCGGT 51699 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||||||||| Sbjct 51700 GAGGGTCTTCACAAAGATTTGCAT 51723 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| ||| ||| |||| || || || ||||||||||| Sbjct 51305 TCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCGGCGAAA 51364 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||||||||| | ||||||||| ||| || || ||| || Sbjct 51365 ATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTG 51424 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| ||| ||||||| ||||| ||||| ||||| || || || ||| Sbjct 51425 TCGATCGTGTCTGATGACTCGACCTCCAACGTAATAGTCTTACCCGTGAGGGTTTTGACA 51484 Query 45326 AAGATTTGCATG 45337 || ||||||||| Sbjct 51485 AATATTTGCATG 51496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395032255202299