Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1717 113 6e-20 seq2640 98.7 1e-15 >seq1717 Length=72410 Score = 113 bits (124), Expect = 6e-20 Identities = 365/564 (65%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || ||| ||||| ||||| || | || || | ||||| || || || Sbjct 62890 CAAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGT 62831 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || || ||||| ||||||||||| || | ||| || |||| |||||| || || || || Sbjct 62830 AAGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAA 62771 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33757 |||||| || || || || || ||||||| || | ||| | || | || | | || Sbjct 62770 GAAGATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGC--AAAGGTCGATTGCTTG 62713 Query 33758 T-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 | |||||||| | |||||||| ||||| ||| | || || || || || | Sbjct 62712 TCGGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACA 62653 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||| || || | | || || || || |||||||| | || Sbjct 62652 GCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAG 62593 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || | || || || ||||| || || ||||| || |||||||| || | |||||| Sbjct 62592 TATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCC 62533 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | ||| ||||| | | || || ||| | | || ||||| || || || || Sbjct 62532 GCTGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAA 62473 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT----TT 34048 || ||||| || |||| || || ||||||| |||| || || | || Sbjct 62472 GCAGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGT-TGTCATTCATCCTGTT 62414 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 |||| || | | ||| ||||| | |||| ||||| | ||||| || || || || Sbjct 62413 CGTCCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTC 62354 Query 34109 TGCCTTTTTATACATATTCCAGAT 34132 |||||||| ||||| | |||||| Sbjct 62353 GGCCTTTTTGTACATTTGCCAGAT 62330 >seq2640 Length=24278 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || ||| ||||| || || || | || || | |||||| || || || Sbjct 17613 CAAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGT 17554 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || |||||||| || ||||||||||| | ||| || || | |||||| || || || || Sbjct 17553 AAGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAA 17494 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC-TGTC 33754 |||||| || || || || || ||||||| || | ||| || | | || |||| Sbjct 17493 GAAGATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGGTTGACTGCTTGTC 17434 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTT 33784 |||||||| | |||||||||||||| Sbjct 17433 GGAAATCCACTTCAGTGCCCAATCGGCCTT 17404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629747383210320