Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1717 109 7e-19 seq2640 95.1 2e-14 >seq1717 Length=72410 Score = 109 bits (120), Expect = 7e-19 Identities = 365/563 (65%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || || ||| ||| | ||||| || | || || | |||||||| || || Sbjct 62890 CAAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGT 62831 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || || ||||| ||||||||||| || | ||| || |||| || || || ||||| || Sbjct 62830 AAGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAA 62771 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG---GCACTGT 36329 ||| || || || || || || ||||||| || | ||| || | || || ||| Sbjct 62770 GAAGATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGGTCGATTGC-TTGT 62712 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | |||||||| | |||||||| ||||| ||| | || || || ||||| | || Sbjct 62711 CGGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACAG 62652 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 ||| || || | | || || || |||||||| || | || | Sbjct 62651 CATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGT 62592 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | | || || || ||||| || || || || || |||||||| || | |||||| | Sbjct 62591 ATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCG 62532 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 ||| ||||| | | || || ||| | | || ||||| || || ||||| | Sbjct 62531 CTGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAAG 62472 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT----TTA 36625 | ||||| || |||| || || ||||||| ||| ||| || | || Sbjct 62471 CAGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCG-TTGTCATTCATCCTGTTC 62413 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 |||| || | | ||| ||||| | |||| ||||| | ||||| || || || || Sbjct 62412 GTCCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTCG 62353 Query 36686 GCCTTTTTATACATATTCCAGAT 36708 |||||||| ||||| | |||||| Sbjct 62352 GCCTTTTTGTACATTTGCCAGAT 62330 >seq2640 Length=24278 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/244 (69%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || || ||| ||| | || || || | || || | ||||||||| || || Sbjct 17613 CAAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGT 17554 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || |||||||| || ||||||||||| | ||| || || | || || || ||||| || Sbjct 17553 AAGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAA 17494 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 36333 ||| || || || || || || ||||||| || | ||| || || |||| | || Sbjct 17493 GAAGATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCA-AAGGTTGACTG-CTTG 17436 Query 36334 T-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | |||||||| | |||||||||||||| || | || || || ||||| | | Sbjct 17435 TCGGAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGACA 17376 Query 36389 GCAT 36392 |||| Sbjct 17375 GCAT 17372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658099421959960