Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1977 100 2e-16 seq1717 96.9 2e-15 seq1603 95.1 9e-15 seq2640 84.2 2e-11 >seq1977 Length=76175 Score = 100 bits (110), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGG 33623 || || ||| |||| |||||||||||||| ||| ||||| |||||||| ||| || Sbjct 24567 CGTATTCCACAGATCGGCGACAAGTTTGCCTCGCGACACGG-TCAGAAGGGTACGATTGG 24625 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 || | ||| |||| |||||||| |||||||| || || | || ||||| || | Sbjct 24626 TATTACCTACCGCCAGGAAGACATGCCCTTCACGGCGGAGGGTATCGTGCCGGATCTCAT 24685 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGACG 33717 |||||||||||| || ||||||| || |||||| Sbjct 24686 CATCAACCCGCACGCTATCCCCTCTCGTATGACG 24719 >seq1717 Length=72410 Score = 96.9 bits (106), Expect = 2e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| | ||||| || ||||| || || || | || ||||| || || || ||||| Sbjct 62735 CGTCTGGTTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTCGCTGCCATC 62794 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||| ||||||| ||| |||||||| || | | || ||||||||| | || ||| Sbjct 62795 TTCTGGATGAAGAAGCGTGGCCTCATGCCTGGTCTTACTTTCTCCAACGAGCTCATCAGC 62854 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 ||||| || || | ||| ||||||||||| |||| || Sbjct 62855 CGTGATGAGGGCATGCACACCGACTTTGCTTGCTTGCTCTT 62895 >seq1603 Length=129623 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGTT-CACGGCCCAGAAGGGCACGTGCGG 33623 || || ||| |||| |||||||||||||| ||| ||||| | ||||||| ||| || Sbjct 109104 CGTATCCCACAGATCGGCGACAAGTTTGCCTCGCGACACGGTC-AGAAGGGTACGATTGG 109046 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 || | || |||| |||||||| |||||||| || || | || ||||| || | Sbjct 109045 TATTACTTATCGCCAGGAAGACATGCCCTTCACGGCGGAAGGTATCGTGCCGGATCTTAT 108986 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGACG 33717 |||||||||||| || ||||||| || |||||| Sbjct 108985 CATCAACCCGCACGCTATCCCCTCTCGTATGACG 108952 >seq2640 Length=24278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| | ||||| || ||||| || || || | || ||||| || || || || || Sbjct 17458 CGTCTAGTTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGCTCCTTCGCTGCTATC 17517 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||| |||| || ||| || ||||| || | | || |||||||| | || ||| Sbjct 17518 TTCTGGATGAAAAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCCAACGAACTTATCAGC 17577 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 ||||| ||||| | ||| ||||||||||| |||| || Sbjct 17578 CGTGATGAAGGCATGCACACCGACTTTGCTTGCTTGCTCTT 17618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356194877296357