Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1796 100 3e-16 seq1723 100 3e-16 >seq1796 Length=58898 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || || | | ||| || ||||| || ||| Sbjct 51755 GTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGCCCGTCCTCAAGCTGCTTGCCA 51814 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||||||||| || ||||| || ||||| ||| || || Sbjct 51815 GCGAAGATGAGACGTTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTG 51874 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||||| ||| | |||||||| |||| ||| Sbjct 51875 ACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGTGATAGTCTTGCCCGTCAGAGTT 51934 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 51935 TTGACAAAGATCTGCATA 51952 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||||| || ||||| || || ||||| ||||| Sbjct 51496 GCCACCACGCAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 51555 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||| || || || ||| ||||||||||||| ||||| || || Sbjct 51556 AAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGG 51615 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | |||| ||| | | || | ||||||| | |||| Sbjct 51616 GATACCCTCCTTATC-CTGAATCTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCA 51674 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | |||||||||||| | || || || || ||||||||| Sbjct 51675 CTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCATA 51724 >seq1723 Length=56463 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| || || || | | ||| |||||||| || ||| Sbjct 44012 GTGGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGCCCGTCCTCGAGCTGCTTTCCA 43953 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||| ||||||||||| || ||||| || ||||| ||| || || Sbjct 43952 GCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTG 43893 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||||| ||| | |||||||| |||| || Sbjct 43892 ACGTTATCAATGGTGTCGGACGACTCGACCTCAAGGGTAATAGTCTTGCCCGTCAGAGTC 43833 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 43832 TTGACGAAGATCTGCATA 43815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | ||||| || || || || || ||||| ||||| Sbjct 44270 CCACCACGCAGACGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGAA 44211 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||| || || || || ||||||||||||| ||||| || || Sbjct 44210 AGAGTGCGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGGGG 44151 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||||||| || | | || | ||||||| | ||||| Sbjct 44150 ATACCCTCCTTATCCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCACT 44091 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||||||| | || || || || ||||||||| Sbjct 44090 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCATA 44043 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||||||||||| || ||||| || || |||||||| || || Sbjct 43814 CCACCGCGGAGACGCAAAACTAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCACTG 43755 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || |||||| |||| || ||||| || || ||||| Sbjct 43754 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATTAGGCGTTGTTGGTCAGGAGGA 43695 Query 139658 AT 139659 || Sbjct 43694 AT 43693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496008695064800