Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1717 114 2e-20 seq2640 113 6e-20 >seq1717 Length=72410 Score = 114 bits (126), Expect = 2e-20 Identities = 366/563 (65%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || || || ||| ||||| |||||||| | || || | |||||||| || || Sbjct 62890 CAAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGT 62831 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || || ||||| ||||||||||| || | ||| || || | || || || ||||| || Sbjct 62830 AAGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAA 62771 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG---GCACTGT 42236 |||||| || || || || || ||||||| || | ||| || | || || ||| Sbjct 62770 GAAGATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGGTCGATTGC-TTGT 62712 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | |||||||| | |||||||| ||||| ||| | || || || || || | | Sbjct 62711 CGGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACAG 62652 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 ||| || || | | || || || ||||||||||| | || | Sbjct 62651 CATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGT 62592 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 | | ||||| || ||||| || || ||||| || |||||||| || | ||||| | Sbjct 62591 ATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCG 62532 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 |||| ||||| | | || || || | | || || || || || ||||| | Sbjct 62531 CTGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAAG 62472 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTA 42532 | ||||| || |||| || || ||||||| |||| | || || || Sbjct 62471 CAGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGT-TGTCATTCATCCTGTTC 62413 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 |||| || | | ||| ||||| | || | ||||| | ||||| || || ||||| Sbjct 62412 GTCCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTCG 62353 Query 42593 GCCTTTTTATACATATTCCAGAT 42615 |||||||| ||||| | |||||| Sbjct 62352 GCCTTTTTGTACATTTGCCAGAT 62330 >seq2640 Length=24278 Score = 113 bits (124), Expect = 6e-20 Identities = 366/564 (65%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || || || ||| ||||| || ||||| | || || | ||||||||| || || Sbjct 17613 CAAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGT 17554 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || |||||||| || ||||||||||| | ||| || |||| || || || ||||| || Sbjct 17553 AAGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAA 17494 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 42240 |||||| || || || || || ||||||| || | ||| || || |||| | || Sbjct 17493 GAAGATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCA-AAGGTTGACTG-CTTG 17436 Query 42241 T-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | |||||||| | |||||||||||||| || | || || || || || | Sbjct 17435 TCGGAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGACA 17376 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||| || || | | || || || ||||||||||| | || Sbjct 17375 GCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAG 17316 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 || | ||||| || ||||| || || ||||| || |||||||| || | ||||| Sbjct 17315 TATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCC 17256 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | | || ||||| | | || || ||| | | || || || || || ||||| Sbjct 17255 GCTGCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGTCCGAA 17196 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TT 42531 || || || || |||| || || ||||| | ||||| | || || || Sbjct 17195 GCAGCGAAGAAAGCCAGGACGTGAGAGATAAAGTGACGTTCGT-TGTCATTCATCTTGTT 17137 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 |||| || | | || ||||| | || | || || | ||||| || || ||||| Sbjct 17136 CGTCCAGTCGTGCAGGTCCTTAGAGAGGTCCATCTCCTCAGCAGTCCAGAAAGAAGCTTC 17077 Query 42592 TGCCTTTTTATACATATTCCAGAT 42615 ||||| |||||||| | |||||| Sbjct 17076 GGCCTTCTTATACATTTGCCAGAT 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671064376368440