Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1717 172 8e-38 seq1790 109 8e-19 seq1576 109 8e-19 >seq1717 Length=72410 Score = 172 bits (190), Expect = 8e-38 Identities = 387/567 (68%), Gaps = 26/567 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| | || || || ||||| | ||||||| | || || Sbjct 62330 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCTTTCTGGACTGCCGAAGAGATGGACCTC 62389 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| ||| |||| ||| || | ||| ||| | ||||| | ||||| || Sbjct 62390 TCTAAGGATCTGCACGACTGGACGAACAGGATGAATGACAACGAGCGTCATTTTATCTCC 62449 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || |||| |||||||| | || || || ||||| || || || || || || || Sbjct 62450 CACGTTCTGGCTTTCTTTGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTAGA-GCG 62508 Query 125198 ATTCTCTCAAG-AGTTGA-CCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||| | | |||| | || | |||| ||| ||||| ||||| ||||| ||||| Sbjct 62509 TTTCTCCAACGAAGTTCAGGCA--GCGGAGG-CTCGTTGCTTCTACGGTTTCCAGATCAT 62565 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA-TC 125313 ||| |||||| | ||||| || | ||||| ||| || || | |||||||| || | Sbjct 62566 GATGGAGAACATCCACTCAGAGACATACTCGCTACTCATCGATACATACATTCGGGACCC 62625 Query 125314 CGC--AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT---ACGTAA 125368 ||| | |||| | || || | || |||| || | || | || |||| Sbjct 62626 CGCCGAGCGTA---CCCGACTGTTCGATGCTGTCGAGACTATTCCATGCATCAAACGT-- 62680 Query 125369 AAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG---TCTTCGTACGCCGACAG 125425 ||||| | |||| | |||||| | ||||||| || | | ||||| | Sbjct 62681 -AAGGCGGATTGGGCACTGAAGTGGAT---TTCCGACAAGCAATCGACCTTTGCCGAGCG 62736 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 ||||| || |||||||| || ||||| |||||||| || ||| || || |||||||| Sbjct 62737 TCTGGTTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTCGCTGCCATCTT 62796 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| | |||||||| || |||||||| || || || | |||||| | || || Sbjct 62797 CTGGATGAAGAAGCGTGGCCTCATGCCTGGTCTTACTTTCTCCAACGAGCTCATCAGCCG 62856 Query 125546 AGACGAGGGCCTACACTGTGACTTTGC 125572 || |||||| | ||| |||||||| Sbjct 62857 TGATGAGGGCATGCACACCGACTTTGC 62883 >seq1790 Length=20529 Score = 109 bits (120), Expect = 8e-19 Identities = 178/250 (71%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 69992 AAGGGTGTACACATTTGGAGCGGCAACAGTAGTCGAAG-CGTTTT-GGATTCGC-TCGGC 70048 ||| |||| | || ||| |||||| || |||||| |||||| ||| |||| | ||| Sbjct 9807 AAGAGTGTTAAGATCTGGGACGGCAATGGT--TCGAAGGCGTTTTTGGAGTCGCGTGGGC 9864 Query 70049 TTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCG 70108 || | |||||| || |||||||| ||||| || || || ||||||||| |||||| | Sbjct 9865 TTGGGC-ACAGACGTGAAGGCGATCTTGGGCCCGTATATGGTTTCCAGTGGCGGCACTGG 9923 Query 70109 GGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAG 70168 ||| | ||||| |||||| | ||||| || || | ||||| ||||| || || Sbjct 9924 GGCGCAGAGTATACCACCTGCGATGCGGACTACTCTGGAAAAGGTGTAGATCAGCTGAAG 9983 Query 70169 ACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGG 70228 | | ||||| | | |||| ||||| || ||| |||||||| | | | ||||| Sbjct 9984 GAAGTAATTGAAAAGATTAAGAAAAATCCTACGGATCGGAGGATCATCCTTAGTGCATGG 10043 Query 70229 AATCCTGCAG 70238 ||||||| || Sbjct 10044 AATCCTGGAG 10053 >seq1576 Length=108808 Score = 109 bits (120), Expect = 8e-19 Identities = 177/250 (71%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 69992 AAGGGTGTACACATTTGGAGCGGCAACAGTAGTCGAAGCG--TTTTGGATTCGC-TCGGC 70048 |||||||| | || ||| |||||| || |||||| ||||||| |||| | ||| Sbjct 24106 AAGGGTGTTAAGATCTGGGACGGCAATGGT--TCGAAGGCATTTTTGGAGTCGCGTGGGC 24049 Query 70049 TTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCG 70108 || | |||||| || |||||||| ||||| || || || ||||||||| |||||| | Sbjct 24048 TTGGAC-ACAGACGTGAAGGCGATCTTGGGCCCGTATATGGTTTCCAGTGGCGGCACTGG 23990 Query 70109 GGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAG 70168 ||| | | ||| |||||| | ||||| || || | ||||| ||||| || || Sbjct 23989 GGCGCTGAATATACCACCTGCGATGCGGACTACTCTGGAAAAGGTGTCGATCAGCTGAAG 23930 Query 70169 ACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGG 70228 | | ||||| | |||||| ||||| || ||| |||||||| | | | ||||| Sbjct 23929 GAAGTAATTGAAAAAATCAAGAAAAATCCTACGGATCGGAGGATCATCCTTAGTGCATGG 23870 Query 70229 AATCCTGCAG 70238 ||||||| || Sbjct 23869 AATCCTGGAG 23860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740976581162440