Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1717 93.3 4e-14 seq2640 91.5 1e-13 >seq1717 Length=72410 Score = 93.3 bits (102), Expect = 4e-14 Identities = 354/550 (64%), Gaps = 7/550 (1%) Strand=Plus/Minus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| || ||||| || ||||| | || || |||||||| || || || ||| Sbjct 62886 CAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTAAGA 62827 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| || || || || || ||||| || || ||||| || ||||| || || || Sbjct 62826 CCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAG 62767 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || || || || || || || || | || | || || | || | ||| | || Sbjct 62766 ATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGGT-CGATTGCTTGTCGGA 62708 Query 13331 A-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 | ||||||| ||||| | || || |||| | ||| ||| | || | || | Sbjct 62707 AATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACAGCATC 62648 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACA 13448 || | | || ||| ||| || ||||| || | || || | || Sbjct 62647 GAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTA-GCGAGTATG 62589 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 | ||||| || || || |||||| || |||||||| || || || | |||||| | | Sbjct 62588 TCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCTG 62529 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||||||| | | || | ||| | | ||| || || || || ||||| ||||| Sbjct 62528 CCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAAGCAG 62469 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACC 13625 |||| ||||| || | ||| ||||| | ||||| || || | || || Sbjct 62468 CAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGTTGTCATTCATCCTGTTCGTCC 62409 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | || | | ||| || || | || | ||| || | ||||| |||||||| | |||| Sbjct 62408 AGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTCGGCCT 62349 Query 13686 TCTTATACAT 13695 | || ||||| Sbjct 62348 TTTTGTACAT 62339 >seq2640 Length=24278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 354/551 (64%), Gaps = 9/551 (2%) Strand=Plus/Minus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| || ||||| |||||||| | || || || ||||| || || || ||| Sbjct 17609 CAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGA 17550 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || |||||||| || || ||||| ||||| || |||||||| || || || || || || Sbjct 17549 CCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAG 17490 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT--ACTATTTTTACTCT 13328 || || || || || || || || | | | || || | || ||| || | Sbjct 17489 ATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGGTTGACTGCTTGTCGGAA 17430 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 |||||||| ||||| | || || | || | ||| ||| | || | || | Sbjct 17429 --ATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGACAGCAT 17372 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TAC 13447 || | | || ||| ||| || ||||| || | || || | || Sbjct 17371 CGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTA-GCGAGTAT 17313 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 | ||||| || || || |||||| || |||||||| || || || | |||||| | | Sbjct 17312 GTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCT 17253 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | ||||||||| | | || | || | | ||| || || || || ||||| |||| Sbjct 17252 GCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGTCCGAAGCA 17193 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAAC--- 13624 || || ||||| || | ||| ||||| | |||||| || || ||| | Sbjct 17192 GCGAAGAAAGCCAGGACGTGAGAGATAAAGTGACGTTCGTTGTCATTCATCTTGTTCGTC 17133 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || || | | || || || | || | ||||||| | ||||| |||||||| | ||| Sbjct 17132 CAGTCGTGCAGGTCCTTAGAGAGGTCCATCTCCTCAGCAGTCCAGAAAGAAGCTTCGGCC 17073 Query 13685 TTCTTATACAT 13695 ||||||||||| Sbjct 17072 TTCTTATACAT 17062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430935552078438