Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1796 132 1e-25 seq1723 122 2e-22 >seq1796 Length=58898 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || ||||| |||||||| || ||||| || || || | |||||| || || Sbjct 51290 AGATGAAGAGTCGATTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGC 51349 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || ||||| || ||||| || | ||| || || ||||| || || || |||||||| ||| Sbjct 51350 TGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATC 51409 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || | || ||||| | |||||||||||||| Sbjct 51410 TTGGCCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCCAACGTAATAGTCTTACCC 51469 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| ||||| Sbjct 51470 GTGAGGGTTTTGACAAATATTTGCAT 51495 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || ||||| | ||| ||||| ||||| ||||| Sbjct 51527 GTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTGCTTTCCG 51586 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||||| || || || || ||||||||||||||||| || Sbjct 51587 GCAAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTTGCCTTA 51646 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | ||| || || || || || ||||| || || || || Sbjct 51647 ACGTTATCGATGGTGTCGGATGATTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 51706 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 51707 TTCACAAAGATTTGCAT 51723 >seq1723 Length=56463 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || || ||||| | ||| ||||| ||||| ||||| Sbjct 44240 GTGGATTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTGCTTTCCG 44181 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||||| || || || || |||||||| || ||||| || Sbjct 44180 GCGAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGGATTTTTGCCTTA 44121 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | ||| || || || || || ||||| || || || || Sbjct 44120 ACGTTATCGATGGTGTCGGATGATTCCACTTCGAGGGTGATCGTCTTGCCGGTGAGGGTC 44061 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 44060 TTCACAAAGATTTGCAT 44044 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || ||||| || ||||||||||| | || | ||||| Sbjct 44028 AAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGCCCGTC 43969 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || |||||||| ||||| || | ||| ||||| || || || || || || || Sbjct 43968 CTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 43909 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || || || || | ||| ||| | || ||||| || |||||||| Sbjct 43908 TTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGACGACTCGACCTCAAGGGTAATAGT 43849 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 43848 CTTGCCCGTCAGAGTCTTGACGAAGATCTGCAT 43816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151266824307652