Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1790 87.8 1e-12 seq1576 82.4 5e-11 >seq1790 Length=20529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCCGA 25795 ||||||||| || || | || |||||||| || | || || || |||||||| || Sbjct 9980 CAGCTGATCTACACCTTTTCCAGAGTAGTCCGCATCGCAGGTG-GTATACTCTGCGCCCC 9922 Query 25796 AATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGC 25855 | | || ||||||||| || || || || || || || || || |||||| ||| | Sbjct 9921 AGTGCCGCCACTGGAAACCATATACGGGCCCAAGATCGCCTTCACGTCTGTGCCCAAGCC 9862 Query 25856 CCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGG 25915 | | | |||||||| | | ||||||||| ||||||||||||| || | ||| | Sbjct 9861 CACGCGACTCCAAAAACGCCTTCGAACCATTGCCGTCCCAGATCTTAACACTCTTGGCAC 9802 Query 25916 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 ||| | |||| |||| || | |||||||| | ||||||| Sbjct 9801 TCAGCAAGGTAGAGTCCGTGGCTCCACGAACGAACCATATCAGCTCC 9755 >seq1576 Length=108808 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCCGA 25795 ||||||||| || || | || |||||||| || | || || || || || || || Sbjct 23933 CAGCTGATCGACACCTTTTCCAGAGTAGTCCGCATCGCAGGTG-GTATATTCAGCGCCCC 23991 Query 25796 AATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGC 25855 | | || ||||||||| || || || || || || || || || ||||| || |||| Sbjct 23992 AGTGCCGCCACTGGAAACCATATACGGGCCCAAGATCGCCTTCACGTCTGTG-TCCAAGC 24050 Query 25856 CC-CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCG 25914 || | | |||||||| | | ||||||||| ||||||||||||| || ||||| | Sbjct 24051 CCACGCGACTCCAAAAATGCCTTCGAACCATTGCCGTCCCAGATCTTAACACCCTTGGCA 24110 Query 25915 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 ||| |||||| |||| || | |||||||| | || |||| Sbjct 24111 CTCAGCAAGGTGGAGTCCGTGGCTCCACGAACGAACCATATCAACTCC 24158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340100626936587