Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq557 87.8 2e-12 seq1723 84.2 2e-11 >seq557 Length=42797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48521 AAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGC 48580 || ||||| ||||||||||| || ||||| ||||| | | | || ||||||| ||| Sbjct 23694 AAGTGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAAGC 23753 Query 48581 TGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATT 48640 ||||| ||| || | || | |||||| || || || | || |||||||| || Sbjct 23754 TGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGATC 23813 Query 48641 TTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||| ||| | | | || || |||| ||||| ||| | || ||||| ||||| Sbjct 23814 TTCGCCTTAACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTACCC 23873 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || |||||||| Sbjct 23874 GTGAGGGTCTTGACGAAGATCTGCAT 23899 >seq1723 Length=56463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| || ||| |||||| || ||||| || |||| ||| ||| ||||||| Sbjct 44024 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGCCCGTCCTCG 43965 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || |||| | |||||||||||| || | | |||||||| Sbjct 43964 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGG 43905 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | ||||| |||| ||||| ||| | || || || || Sbjct 43904 ATCTTGGCCTTGACGTTATCAATGGTGTCGGACGACTCGACCTCAAGGGTAATAGTCTTG 43845 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || || |||||||| Sbjct 43844 CCCGTCAGAGTCTTGACGAAGATCTGCAT 43816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421205409862919