Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1796 95.1 1e-14 seq2729 86.0 6e-12 seq1723 86.0 6e-12 >seq1796 Length=58898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963 ||||| ||||| | ||| || |||||||| | ||| |||||||| | ||||| ||| Sbjct 52138 CCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCA 52197 Query 94964 ATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | |||||||| || |||||||| || || ||||||||||||||||| Sbjct 52198 AGGGTGATGGTCTTGCCAGTAAGGGTCTTAACAAAGATCTGCATGCT 52244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||||||| || ||||| || || ||| Sbjct 51797 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGGGGAATGCCCTCCTTG 51856 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | | ||||| | || || |||| ||||| Sbjct 51857 TCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGTGATA 51916 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| |||||||||||||| Sbjct 51917 GTCTTGCCCGTCAGAGTTTTGACAAAGATCTGCAT 51951 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | || || | | ||||| || ||||||||||| || || Sbjct 51341 TCCTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTA 51400 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | ||| ||||| | ||||| || | ||| || Sbjct 51401 TCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCCAACGTAATA 51460 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || ||||| ||||| || ||||||| Sbjct 51461 GTCTTACCCGTGAGGGTTTTGACAAATATTTGCATGC 51497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 94760 GGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 |||||| |||| ||| || || || | || |||| || | ||| | || || || Sbjct 51475 GGTTTTGACAAATATTTGCATGCCACCACGCAGACGCAGGACGAGGTGAAGGGTGGACTC 51534 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||| || | ||| ||||| | |||| ||| || || || |||||| ||||||| Sbjct 51535 CTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCAAAGAT 51594 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | | ||| ||||| || || ||||| || || || | ||| |||||||| ||| | Sbjct 51595 CAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTTGCCTTAACGTTATC 51654 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || ||||| | || || || | ||||| || || || || || || |||||||| Sbjct 51655 GATGGTGTCGGATGATTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAA 51714 Query 94999 GATCTGCAT 95007 ||| ||||| Sbjct 51715 GATTTGCAT 51723 >seq2729 Length=38494 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| | ||||| | | || || || || ||||||||||| ||| Sbjct 316 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTG 257 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| ||||||| | ||||| || | ||||| Sbjct 256 TCCTGGATCTTCGCCTTGACATTATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATC 197 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| || || ||||||||||| Sbjct 196 GTCTTACCCGTGAGAGTCTTGACGAAGATCTGCAT 162 >seq1723 Length=56463 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963 ||||| ||||| | ||| || |||||||| | | | ||||||| | ||||| ||| Sbjct 43629 CCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGGACTCGACCTCA 43570 Query 94964 ATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | |||||||| || |||||||| || || ||||||||||||||||| Sbjct 43569 AGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATGCT 43523 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | || |||||||| || | ||| ||||| | |||| | Sbjct 44258 CGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCA 44199 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || |||||| | ||||| | | ||| ||||| || || ||||| || || Sbjct 44198 TCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTA 44139 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||||| ||| ||| ||||| | || || || | ||||| Sbjct 44138 TCCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCACTTCGAGGGTGATC 44079 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| ||||| Sbjct 44078 GTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 44044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448241221134840