Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2468 109 9e-20 seq1935 109 9e-20 seq1890 105 1e-18 seq1534 102 1e-17 seq303 98.7 2e-16 >seq2468 Length=17546 Score = 109 bits (120), Expect = 9e-20 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 ||||| || |||||||| ||||| |||||||| || |||||||| || ||||||||| || Sbjct 12087 CAAGGCATTACCAAGCCTGCTATTCGTCGTCTTGCCCGTCGTGGCGGTGTCAAGCGTATC 12146 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| | | ||||| |||| ||||| |||| | |||||||||||| Sbjct 12147 TCTGGTCTCATTTATGAGGAGACTCGTGGTGTTCTTAAGATCTTCCTC 12194 >seq1935 Length=111118 Score = 109 bits (120), Expect = 9e-20 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||||||||||||||||||||| |||||||| || || |||||| |||| Sbjct 21856 AGGTATCACTAAGCCAGCTATCCGTCGTCTGGCGCGTCGTGGCGGTGTTAAGCGTATCTC 21797 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || ||| | || || |||| || | || | ||||| |||||| ||| ||| || | Sbjct 21796 GGGCTTGATTTACGAGGAGACGCGCGGCGTCCTCAAGATTTTCCTCGAGAACGTCATTCG 21737 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| | || || ||||||||||| || || Sbjct 21736 TGACTCAGTCACTTACACCGAGCACGCCAAGCG 21704 >seq1890 Length=24666 Score = 105 bits (116), Expect = 1e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||||||||||||||||||||| |||||||| || || |||||| |||| Sbjct 22728 AGGTATCACTAAGCCAGCTATCCGTCGTCTGGCGCGTCGTGGCGGTGTTAAGCGTATCTC 22669 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || ||| | || || |||| || | || | ||||| ||||| ||| ||| || | Sbjct 22668 GGGCTTGATTTACGAGGAGACACGCGGCGTCCTCAAGATTTTCCTTGAGAACGTCATTCG 22609 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| | || ||| || |||||||| || || Sbjct 22608 TGACTCAGTCACCTACACTGAGCACGCCAAGCG 22576 >seq1534 Length=40436 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || |||||||| |||||||| ||||| || || |||||||| ||||||||| |||| Sbjct 33086 AGGCATTACCAAGCCCGCTATCCGCCGTCTTGCACGCCGTGGTGGTGTCAAGCGTATCTC 33027 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | |||| ||||||| |||| ||| | |||||||||||| | | ||| Sbjct 33026 TGGTCTTATCTACGAAGAGACCCGTGGTGTCCTCAAGATCTTCCTCGAAAACGT 32973 >seq303 Length=18115 Score = 98.7 bits (108), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || || || ||||| |||||||| || || |||||||| ||||||||| |||| Sbjct 16966 AGGTATTACAAAACCCGCTATTCGTCGTCTTGCACGCCGTGGTGGTGTCAAGCGTATCTC 16907 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | |||| ||||||| |||| |||| | ||||||||||| ||| ||| Sbjct 16906 TGGTCTCATCTACGAAGAGACCCGTGGTGTTCTTAAGATCTTCCTGGAGAACGT 16853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067045295867