Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4000 140 2e-28 seq1155 140 2e-28 seq1739 122 6e-23 seq27 120 2e-22 seq1796 95.1 8e-15 seq1723 89.7 3e-13 >seq4000 Length=10826 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9194 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9253 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9254 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9288 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1063 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTT 1122 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1123 GCCAATATTTAGCTTTA 1139 >seq1155 Length=10417 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8956 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9015 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9016 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9050 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 931 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTT 990 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 991 GCCAATATTTAGCTTTA 1007 >seq1739 Length=117728 Score = 122 bits (134), Expect = 6e-23 Identities = 199/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260 || ||||||||| ||||| | | | ||||| |||| || |||||||| || || Sbjct 114615 TTTTACCGCTACCGCATGCCCCTCCTGATGACCAAGATCGAAGGCAAGGGAAATGGCATC 114674 Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320 || |||||| | ||||||| |||| |||||| || ||| |||||| ||||||| Sbjct 114675 AAGACCGTCGTACCCAACATGTCTGATGTCGCTCGCGCTCTCTCTCGCCCTCCCACCTAT 114734 Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||||| ||||| || |||||||| || |||||| | |||||||| Sbjct 114735 CCTACCAAGTTCTTCGGCTGCGAGCTAGGCGCTCAAACCTCCTTTGATGAAAAAAACGAC 114794 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | ||| || || || | || ||| || | || | || | || || | ||| Sbjct 114795 CGGTACATTGTCAATGGCGCACACAACGCTTCTCGCCTTCGTGAGCTGCTCGATGCCTTC 114854 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || |||||||||||| || || ||| | ||||| ||||| || Sbjct 114855 ATCGACAAGTTTGTGCTCTGCGGGTCGTGCAAGAACCCCGAGACGGA 114901 >seq27 Length=65845 Score = 120 bits (132), Expect = 2e-22 Identities = 180/256 (70%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| ||||||| ||||| ||||| ||||| |||||| | ||||||| |||| |||| Sbjct 40787 CCAAGATCGAGGGCAAGGGGAACGGCATTAAGACCGTCGTACCCAACATGTCTGATGTCG 40846 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || || ||| |||||| ||||||| || || || | |||||| ||||| || |||| Sbjct 40847 CTCGCGCTCTCTCTCGCCCTCCCACCTATCCCACCAAGTTTTTCGGCTGCGAGCTGGGCG 40906 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | || || || ||| | ||||| || || | ||| || || || | || ||| || Sbjct 40907 CCCAAACCTCCTTCGATGAGAAAAATGATCGGTACATTGTCAATGGTGCACACAACGCTT 40966 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | || | || | ||||| | ||| || |||||||||||| || | ||| Sbjct 40967 CTCGCCTTCGTGAGCTGCTTGATGCCTTCATCGACAAGTTTGTGCTTTGCGGATCGTGCA 41026 Query 6472 ATAACCCGGAGACCGA 6487 | ||||| ||||| || Sbjct 41027 AGAACCCCGAGACGGA 41042 >seq1796 Length=58898 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| || | ||||| ||| |||||| || || |||||||| || Sbjct 51497 CCACCACGCAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 51556 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||| ||||||||||| || || ||||||||||| | |||| Sbjct 51557 AGAGTGCGACCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGGG 51616 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| ||| ||| || || | || || || ||| ||| Sbjct 51617 ATACCCTCCTTATCCTGAATCTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCACT 51676 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | ||| ||||| || || ||||| Sbjct 51677 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 51723 >seq1723 Length=56463 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| || | ||||| ||| ||||| || || |||||||| | Sbjct 44272 TACCACCACGCAGACGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCG 44213 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||| |||||||| || || || ||||||||||| | || Sbjct 44212 AAAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGG 44153 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| |||||| ||| || || | || || || ||| | Sbjct 44152 GGATACCCTCCTTATCCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCA 44093 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||| ||||| || || ||||| Sbjct 44092 CTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 44044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334910791134689