Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1723 98.7 9e-16 seq2729 84.2 2e-11 seq1796 84.2 2e-11 seq557 84.2 2e-11 >seq1723 Length=56463 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || ||||| ||||||| | || || ||||| || Sbjct 44272 ATGCAAATATTCGTCAAGACCCTCACGGGTAAGACCATCACGTTGGAGGTCGAGTCATCA 44331 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || || || ||||| || ||||| Sbjct 44332 GACACGATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 44391 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || | || |||| ||| || || || ||||| Sbjct 44392 CAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACGCTGTCGGACTACAAC 44451 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 ||||| || || || || || ||| Sbjct 44452 ATTCAGAAGGAGTCGACTCTTCAT 44475 >seq2729 Length=38494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || ||||| | ||||| | || || ||||| ||| Sbjct 162 ATGCAGATCTTCGTCAAGACTCTCACGGGTAAGACGATCACCCTGGAGGTCGAGTCCTCT 221 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| || |||||| Sbjct 222 GACACGATCGATAATGTCAAGGCGAAGATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 281 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || || | |||||| | || |||||| Sbjct 282 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCTGACTACAAT 341 Query 25179 ATTCAAAAAGA 25189 || || || || Sbjct 342 ATCCAGAAGGA 352 >seq1796 Length=58898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || ||||| | || || | || || ||||| || Sbjct 51495 ATGCAAATATTTGTCAAAACCCTCACGGGTAAGACTATTACGTTGGAGGTCGAGTCATCA 51436 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || || || || ||||| || ||||| Sbjct 51435 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 51376 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || | || || | ||| || || || ||||| Sbjct 51375 CAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAAC 51316 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 ||||| || ||||| || || ||| Sbjct 51315 ATTCAGAAGGAATCGACTCTTCAT 51292 >seq557 Length=42797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| |||| || ||||| || Sbjct 24129 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCC 24070 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT----GA 25114 ||||| ||||| ||||| | | ||| ||||| || | | ||| || || Sbjct 24069 GACACGATCGACAACGTGAAGGCCAGA-TCAA-GACAAGGAGGCGNNTCCCCCGTCCCGA 24012 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || ||||||||||| || | ||||| | ||||||| | ||||| Sbjct 24011 CCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCGGATTA 23952 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || ||||| || || Sbjct 23951 CAACATCCAGAAGGAGTCCACTCTTCA 23925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433280897110985