Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1723 141 8e-29 seq1796 140 3e-28 seq557 105 6e-18 >seq1723 Length=56463 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || ||| |||| || ||||||||| | || Sbjct 44044 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTGGAATCATCC 44103 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || |||||| || || ||||||||||| || || |||||| Sbjct 44104 GACACCATCGATAACGTTAAGGCAAAAATCCAGGATAAGGAGGGTATCCCCCCTGATCAA 44163 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || || | || ||| ||||| | || ||||||||| Sbjct 44164 CAACGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAAC 44223 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | || | ||| |||| |||| || ||| Sbjct 44224 ATCCAGAAGGAATCCACCCTTCACCTCGTTCTGCGTCTGCGTGGTGGT 44271 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || | || ||||| || || | || Sbjct 43816 ATGCAGATCTTCGTCAAGACTCTGACGGGCAAGACTATTACCCTTGAGGTCGAGTCGTCC 43875 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| ||||| |||||||| Sbjct 43876 GACACCATTGATAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGATCAG 43935 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| || ||| | || || || ||| Sbjct 43936 CAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGACGGGCGTACCTTGTCTGACTATAAC 43995 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | ||||| || | || | ||||| ||| Sbjct 43996 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTTCGTCTCCGCGGTGGT 44043 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 ||||||| || || |||||||| || || ||||| ||||| ||| | |||||| ||||| Sbjct 43691 GTATTCCTCCTGACCAACAACGCCTAATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCA 43750 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCG 22441 || || || || ||||| || || || ||||| | || ||||||||||| | |||| Sbjct 43751 CCCTCAGTGACTATAACATCCAGAAGGAGTCCACTCTTCACTTAGTTTTGCGTCTCCGCG 43810 Query 22442 GAGGT 22446 | ||| Sbjct 43811 GTGGT 43815 >seq1796 Length=58898 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || ||| ||||||| ||||||||| | || Sbjct 51723 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAATCATCC 51664 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||| ||||| || ||||||||||| || || |||||| Sbjct 51663 GACACCATCGATAACGTTAAGGCAAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAA 51604 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| || || | || ||| ||||| | || ||||||||| Sbjct 51603 CAACGTCTGATCTTTGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAAC 51544 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || |||| |||| || || Sbjct 51543 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTGCGTCTGCGTGGTGG 51497 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || |||| ||||| || || | || Sbjct 51951 ATGCAGATCTTTGTCAAAACTCTGACGGGCAAGACTATCACCCTTGAGGTTGAGTCGTCC 51892 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || |||||||||||||| ||||| |||||||| Sbjct 51891 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGATCAG 51832 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | ||||| || ||| | || || |||||| Sbjct 51831 CAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGGCGTACCTTGTCTGACTACAAC 51772 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | ||||| || Sbjct 51771 ATCCAGAAGGAGTCCACCCTCCATTTGGT 51743 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || ||||| || | || | || || || | | Sbjct 51495 ATGCAAATATTTGTCAAAACCCTCACGGGTAAGACTATTACGTTGGAGGTCGAGTCATCA 51436 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || || |||||||||||||| ||||| || Sbjct 51435 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 51376 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| || || | || || |||||| Sbjct 51375 CAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAAC 51316 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 51315 ATTCAGAAGGAATCGAC 51299 >seq557 Length=42797 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || | || || || || || || || Sbjct 23899 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCC 23840 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || |||||||||||||||||||| ||||| ||| Sbjct 23839 GACACGATCGATAATGTTAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCCGACCAA 23780 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| |||||||||| ||| Sbjct 23779 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACACTCTCCGATTATAAC 23720 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 23719 ATCCAGAAGGA 23709 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/201 (69%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| || || || || || || Sbjct 24129 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCC 24070 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC----CGA 22334 || || | ||| | | || | | |||||||||||||| ||| || ||| Sbjct 24069 GACACGATCGACAACGTGAAGGCCAGA--TCAAGACAAGGAGGCGNNTCCCCCGTCCCGA 24012 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || |||||||| || ||||||||||| ||| | || || ||||| | || ||||| Sbjct 24011 CCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCGGATTA 23952 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || || ||||| Sbjct 23951 CAACATCCAGAAGGAGTCCAC 23931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419682375435235