Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2640 228 2e-54 seq1717 219 8e-52 seq2085 84.2 4e-11 >seq2640 Length=24278 Score = 228 bits (252), Expect = 2e-54 Identities = 404/578 (70%), Gaps = 21/578 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| ||||| |||||||| | || | || |||||| || |||||||| ||||| Sbjct 17053 ATCTGGCAAATGTATAAGAAGGCCGAAGCT-TCTTTCTGGACTGCTGAGGAGATGGACCT 17111 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGT-CAC--TGTCTGAGAACGAAA---AGTTTTTC-C 42411 | |||||| | || |||| | || || ||| |||||| | ||| || | Sbjct 17112 CTCTAAGGACCTGCACGACTGGACGAACAAGATGAATGACAACGAACGTCACTTTATCTC 17171 Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 ||| | | ||||| |||||||| || || ||||| || || ||||||||||| | Sbjct 17172 TCA----CGTCCTGGCTTTCTTCGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTTG 17227 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | ||| || || || || ||||| || ||||||||||| |||||||| Sbjct 17228 AGCGTTTCTCCAACGAAGTTCAAGCAGCGGAGGCTCGTTGCTTCTACGGTTTCCAGATCA 17287 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATC 42591 || |||||| | ||||| ||| ||| | ||| || | || ||||| | ||| | Sbjct 17288 TGATGGAGAACATCCACTCAGAGACATACTCGCTACTCATCGATACATACATTCGGGACC 17347 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 ||| |||||||| | | |||||| | || | ||||| || || ||||||||| |||| Sbjct 17348 CCGCCGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGCATCAAGCGTAAGG 17407 Query 42652 CGGACTGGGCGCTCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 | || ||||| || || ||||| ||| | | | |||| || | |||| | || | Sbjct 17408 CCGATTGGGCACTGAAGTGGATTTCCGACAAGC---AGTCAACCTTTGCCGAGCGTCTAG 17464 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | ||||| |||| || ||||| ||||||||||| ||| ||||||| | ||||||||| Sbjct 17465 TTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGCTCCTTCGCTGCTATCTTCTGGA 17524 Query 42769 TCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 | || || ||| | |||||||| || |||||||| |||||||| |||||| | || Sbjct 17525 TGAAAAAGCGTGGTCT-TATGCCCGGTCTTACCTTCTCCAACGAACTTATCAGCCGTGAT 17583 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 || || |||| | |||||||| ||| | || ||||| Sbjct 17584 GAAGGCATGCACACCGACTTTGCTTGCTTGCTCTTCTC 17621 >seq1717 Length=72410 Score = 219 bits (242), Expect = 8e-52 Identities = 400/577 (69%), Gaps = 19/577 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||| ||||| | || | || |||||| ||||| ||||| ||||| Sbjct 62330 ATCTGGCAAATGTACAAAAAGGCCGAAGCT-TCTTTCTGGACTGCCGAAGAGATGGACCT 62388 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGT-CAC--TGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 | ||||| | || |||| | || || ||| ||||| ||| || Sbjct 62389 CTCTAAGGATCTGCACGACTGGACGAACAGGATGAATGACAACGAGCGTCATTTTATCTC 62448 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | ||||| ||||| || || || ||||| || || ||||||||||| | | Sbjct 62449 CCACGTTCTGGCTTTCTTTGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTAGAGCG 62508 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| || || || ||| ||||| || ||||||||||| |||||||| || Sbjct 62509 TTTCTCCAACGAAGTTCAGGCAGCGGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 62568 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| | ||| || | || ||||| | ||| |||| Sbjct 62569 GGAGAACATCCACTCAGAGACATACTCGCTACTCATCGATACATACATTCGGGACCCCGC 62628 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 |||||||| | | |||||| | || | ||||| || || |||||||| |||||||| Sbjct 62629 CGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGCATCAAACGTAAGGCGGA 62688 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGAC--GCAA----CGTTCGGCGAGAGGCTGGT 42709 ||||| || || ||||| | ||||| |||| | || | |||| | ||||| Sbjct 62689 TTGGGCACTGAAGTGGAT------TTCCGACAAGCAATCGACCTTTGCCGAGCGTCTGGT 62742 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 ||||| |||| || ||||| ||||||||||| || ||||||| ||||||||||| | Sbjct 62743 TGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGAT 62802 Query 42770 CAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||| || || || ||||| || || || ||||| ||||| ||||||||| | || | Sbjct 62803 GAAGAAGCGTGGCCTC-ATGCCTGGTCTTACTTTCTCCAACGAGCTCATCAGCCGTGATG 62861 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||| |||| | |||||||| ||| | || ||||| Sbjct 62862 AGGGCATGCACACCGACTTTGCTTGCTTGCTCTTCTC 62898 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 ||||||| ||| ||||||||||| ||| || |||||| | |||||| | | ||| | Sbjct 63038 TGCCCGTTAGCCTTATCGGCATGAACGCCGATCTGATGTGCCAATACATCGAATTCGTTG 63097 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 | |||| ||| || | ||||| | | ||||||| | | |||||||| Sbjct 63098 CTGACCGTCTACTCATCTCTCTGGGTAACGACAAATACTACAACTCAACCAACCCCTTCG 63157 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 |||| ||||| | || ||| | | |||||||| ||||| ||||||||||||||| | | Sbjct 63158 ACTTCATGGACATGATTTCGCTTCAAGGCAAGACAAACTTCTTCGAGAAGCGCGTCTCGG 63217 Query 43138 ACTAC 43142 | ||| Sbjct 63218 ATTAC 63222 >seq2085 Length=44481 Score = 84.2 bits (92), Expect = 4e-11 Identities = 214/323 (66%), Gaps = 11/323 (3%) Strand=Plus/Plus Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||| || |||||||||||| || || | || | | |||||| | ||| | Sbjct 22766 TGAGCGCGGCCCAGTCCCACAT-----TGACGT----GGGTGTCACGCCCCAGAGGTCGA 22816 Query 244311 ACTGCAGCAGCCCCTTGCTG-ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 |||| ||| | ||||||||| |||| |||||| ||||| ||| | || || ||| Sbjct 22817 ACTGTAGCTG-CCCTTGCTGCGCGGGACTGCCCATCCAGGTCTCGTACGTGCCATCACGC 22875 Query 244370 TGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 | || |||| | || | || || |||||||| || || || ||||||||| || Sbjct 22876 TCCGCGAGCTCGCTACTAGCTTCAAGAGCGGCGTAATAAATTGTTTCGAAGATCTGAATG 22935 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 || | | ||||| | || ||| || || | || |||||| |||| || Sbjct 22936 TTGAGCTGTTTGGCCTCAGGGGAGTCGAATGGCATACGCAGGGCCATGAAAGCGTCCGCA 22995 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC 244549 || ||||| || |||| |||||||| | ||| || ||| || || || || ||| Sbjct 22996 AGACCCTGTACACCGACACCGATGGGGCGGTGGCGGAAGTTAGAACGGCGAGCCTCCGGC 23055 Query 244550 ACGGGGTAAAAGTTGCCGTCGAT 244572 ||| || ||||| ||||||| Sbjct 23056 GTGGGATAGTAGTTGACGTCGAT 23078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944233917983440