Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1796 98.7 8e-16 seq1723 91.5 1e-13 >seq1796 Length=58898 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| || || ||||| ||| ||||||||| ||||||||||| | Sbjct 51497 CCACCACGCAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 51556 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||| |||||||| ||||| || || ||||| || Sbjct 51557 AGAGTG-CGACCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGG 51615 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| || ||| ||| ||| ||||| | | | | || | ||||| Sbjct 51616 GATACCCTCCTTATCCTGAATCTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCAC 51675 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || || || ||||| || || ||||||||||||||||| Sbjct 51676 TTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 51723 >seq1723 Length=56463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| || || ||||| ||| |||||||| ||||||||||| | Sbjct 44271 ACCACCACGCAGACGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 44212 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || || | |||||| ||||| || ||||| || || ||||| | Sbjct 44211 AAGAGTG-CGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGG 44153 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| || ||| |||||| ||||| | | | | || | ||||| Sbjct 44152 GGATACCCTCCTTATCCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCA 44093 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || || || ||||| || || ||||||||||||||||| Sbjct 44092 CTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 44044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397019239193038