Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1796 107 2e-18 seq1723 102 8e-17 seq557 96.9 3e-15 seq2729 87.8 2e-12 >seq1796 Length=58898 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| |||||||| || ||||||||||| || | | || || |||| |||||| Sbjct 51290 AGATGAAGAGTCGATTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGC 51349 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| ||||| ||||||| |||||||||||||||||||| || || || || || || Sbjct 51350 TGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATC 51409 Query 64358 TT 64359 || Sbjct 51410 TT 51411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || || || || || |||||||| || | | ||| ||| |||| Sbjct 51739 AAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGCCCGTC 51798 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||||| || | ||||| || ||||| ||||| ||||| || || || || Sbjct 51799 CTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGGGGAATGCCCTCCTTGTC 51858 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | || || | || || || | || | || Sbjct 51859 TTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGTGATAGT 51918 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| |||||| || || || ||||| Sbjct 51919 CTTGCCCGTCAGAGTTTTGACAAAGATCTGCAT 51951 >seq1723 Length=56463 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| ||||| || || ||||||||||| || | | || || | || |||||| Sbjct 44477 AGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCATCCTCAAGC 44418 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| ||||| ||||||| |||||||||||||||||||| || || || || || || Sbjct 44417 TGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATC 44358 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || || | || || || | || | |||||| || Sbjct 44357 TTGGCCTTCACGTTGTCGATCGTGTCTGATGACTCGACCTCCAACGTGATGGTCTTACCC 44298 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || || ||||| |||||||| Sbjct 44297 GTGAGGGTCTTGACGAATATTTGCAT 44272 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || |||| || ||||| || || ||||||||||| | Sbjct 44271 ACCACCACGCAGACGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 44212 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| || ||||| ||||| | || || || || || || || || Sbjct 44211 AAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGGG 44152 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || |||||| ||| || || | || || | ||||| Sbjct 44151 GATACCCTCCTTATCCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCAC 44092 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| | || || || || |||||||| Sbjct 44091 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 44044 >seq557 Length=42797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || ||||| ||||| | || ||||| |||| ||||||||||||||||| | Sbjct 23709 TCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAG 23768 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||| |||||||| ||||| || || || ||||| || || ||| ||| Sbjct 23769 ATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTAACATTA 23828 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || || || | || | |||||| || || | || || ||| Sbjct 23829 TCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTGAGGGTCTTGACG 23888 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 23889 AAGATCTGCAT 23899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || || || ||||||||||| | | ||||| |||| Sbjct 23915 AAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCGTC 23974 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGA 64333 ||| ||||||||||||||| | ||||| || |||||||||||| Sbjct 23975 TTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGA 24017 >seq2729 Length=38494 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || || ||||| || | || ||||| |||| ||||||||||| || || | Sbjct 352 TCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAG 293 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||| |||||||| ||||| ||||| || || || || || ||| ||| Sbjct 292 ATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATCTTCGCCTTGACATTA 233 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| || || || || | || | ||||| || || | ||| || ||| Sbjct 232 TCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTTACCCGTGAGAGTCTTGACG 173 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 172 AAGATCTGCAT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499589095850360