Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1796 107 2e-18 seq2640 89.7 5e-13 seq2729 86.0 6e-12 seq557 84.2 2e-11 >seq1796 Length=58898 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | |||||||| || ||||||||||| | Sbjct 51725 CCACCACGGAGACGAAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 51784 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| || || || || | |||| ||||| || || || || || Sbjct 51785 AAGGTACGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGGGGA 51844 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| |||||| ||| Sbjct 51845 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACC 51904 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||||||||| ||||| |||||||| Sbjct 51905 TCAAGGGTGATAGTCTTGCCCGTCAGAGTTTTGACAAAGATCTGCAT 51951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || ||||| |||||| || || || |||| Sbjct 51302 GATTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCGGCG 51361 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| ||||| ||||| ||||| || || || ||| || || | Sbjct 51362 AAAATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACG 51421 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||| | ||| | || ||||| || || ||||| Sbjct 51422 TTGTCGATCGTGTCTGATGACTCGACCTCCAACGTAATAGTCTTACCCGTGAGGGTTTTG 51481 Query 138601 ACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 51482 ACAAATATTTGCATG 51496 >seq2640 Length=24278 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/163 (73%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 ||||||||||| | ||||||| ||||||||||||| || || || ||||| | Sbjct 17778 GGCATGAACGCCGATCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGTCTACT---- 17833 Query 52731 CAGCTC---GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAA 52786 || ||| ||||| | | || || | |||| | ||| || || || |||||| ||| Sbjct 17834 CATCTCTCTGGGCAACGACAAATATTACAACTCAACCAACCCCTTCGACTTTATGGACAT 17893 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || |||||| | || ||||| ||||| ||||||||||| ||| Sbjct 17894 GATCTCGCTTCAAGGGAAGACAAACTTCTTCGAGAAGCGCGTC 17936 >seq2729 Length=38494 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || || |||||||| | || || |||||| || || || || | | Sbjct 353 CTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAA 294 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| |||||||||||||| || || |||||||| ||||| ||| || || | | Sbjct 293 GATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATCTTCGCCTTGACATT 234 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||| | || | ||| ||||| || ||||| || || Sbjct 233 ATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTTACCCGTGAGAGTCTTGAC 174 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 173 GAAGATCTGCAT 162 >seq557 Length=42797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAA 138480 |||||| || ||||| || ||| | ||| |||| |||||| || || || |||| Sbjct 23708 CTCCTTCTGGATGTTATAATCGG--AGAGTGTGCGACCGTCCTCAAGCTGCTTGCCGGCG 23765 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| || || ||||| || ||||| ||| || || | Sbjct 23766 AAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTAACA 23825 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||| ||||| | || | || ||||| || || || || Sbjct 23826 TTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTGAGGGTCTTG 23885 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 23886 ACGAAGATCTGCAT 23899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496207072945680