Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2452 199 5e-46 seq312 192 7e-44 seq2120 118 1e-21 seq46 118 1e-21 seq2403 86.0 8e-12 seq144 82.4 1e-10 >seq2452 Length=35673 Score = 199 bits (220), Expect = 5e-46 Identities = 260/357 (73%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||||||||| || || || || || || || ||||| |||||||| Sbjct 17172 ATCGAAGTCCTCGCCACCCAAGTGGGTGTCGCCGGCAGTTGCCTTAACTTCGAAGATACC 17113 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||||| | | | || ||||| || || || ||||| || || || ||||| || Sbjct 17112 CTCTTCAATGGTAAGGAGAGAGACATCGAATGTTCCTCCACCAAGATCGAAGATGAGGAC 17053 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | || ||||||||||||||||| |||||||| || || || || || Sbjct 17052 GTTCCTCTCGCCAGCTACCTTCTTATCGAGACCGTAGGCGATAGCGGCAGCAGTGGGCTC 16993 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || |||| || |||| || || |||| || || | ||||| || || || || | Sbjct 16992 GTTGATGATACGGAGGACA-TTGAGACCAGAGATGGTACCAGCATCCTTGGTAGCCTGAC 16934 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | ||||| || || |||||||| || || || || || |||| | |||| || || | Sbjct 16933 GCTGCGAGTCATTGAAGTAGGCGGGAACGGTGACAACGGCGTTCTGGACTGTCGAGCCAA 16874 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || | || || | || ||||| ||| ||| |||||||| ||||| || |||| Sbjct 16873 GGTAGGCCTCAGCAGTCTCCTTCATCTTGAGAAGCACCATCGAGGAAATTTCCTCAG 16817 >seq312 Length=26361 Score = 192 bits (212), Expect = 7e-44 Identities = 256/356 (72%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || ||||||||||| || || || || || || || |||||||| |||||||| Sbjct 15161 ATCGAAGTCCTCACCACCCAAATGGGTGTCGCCGGCAGTTGCCTTGACTTCGAAGATACC 15220 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | | || ||||| || || || ||||| || || || ||||| || Sbjct 15221 CTCCTCAATGGTGAGAAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGGAC 15280 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | || ||||||||||||||||| ||||| || || || || || || Sbjct 15281 GTTCCTCTCGCCAGCTACCTTCTTATCGAGACCGTAGGCGATGGCGGCAGCAGTGGGCTC 15340 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || ||| || |||| || || | ||||| || || || || || Sbjct 15341 GTTGATGATACGGAGGACGTTGAGACCAGAGATGGTACCAGCATCCTTGGTAGCCTGACG 15400 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||||| || || || ||||| || || || || || || | | ||| || || || Sbjct 15401 TTGCGAGTCATTGAAATAGGCGGGAACAGTGACAACGGCATTCTGGACGGTCGAGCCAAG 15460 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || | || || | || ||||| ||| ||| |||||||| ||||| ||||||| Sbjct 15461 GTAGGCCTCAGCAGTCTCCTTCATCTTGAGAAGCACCATCGAGGAAATTTCTTCAG 15516 Score = 129 bits (142), Expect = 7e-25 Identities = 256/378 (68%), Gaps = 1/378 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||||| | |||||| || ||||| | || ||||| ||||| |||||||| ||||| Sbjct 14657 TCACCCGAGAGGATGGCAGCCTGGACGGCAGCACCGTAGGCGACGGCCTCATCAGGGTTG 14716 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | ||||| | || || || || || | ||||| | | | || ||| Sbjct 14717 ATGCTCTTATTGGGCTCCTTGCCATTGAAGAAGTCCGAGACGAGCTTAACGATACGAGGG 14776 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| ||||| || | || || || | || || || || |||||||| | | Sbjct 14777 ATACGAGTCGAACCACCAACAAGGACAATCTCGTGAACATTGGACTTGTCGATCTTGGCG 14836 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || ||||| || || | | ||||||| | ||| |||| ||| Sbjct 14837 TCACGGAGGACCTTCTCGACTGGCTCAAGAGTGCTACGGAAGAGATCCTGGCACAACTCC 14896 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || |||||||||||||| | || || |||||||| | || ||||| | || || ||| Sbjct 14897 TCGAAACGTGCACGGGTGAGCGAGGTGTAGAAATCGATACCCTCGTAGAGGGAGTCGATT 14956 Query 7310 TC-AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || | | | || || | | || || | ||| ||||| || ||||| || || || || Sbjct 14957 TCGAGTCGAGGTCTGGGTGGCAGACGAGAGCGTGCGCTTGGCACGCTCGCAAGCAGTACG 15016 Query 7369 TAAACGACGAAGGGCACG 7386 | |||||| || || || Sbjct 15017 CAGACGACGGAGAGCGCG 15034 >seq2120 Length=51513 Score = 118 bits (130), Expect = 1e-21 Identities = 188/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||||| | |||| ||| Sbjct 38129 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCAGCAGTAGCCTTGACGGCGAAGACACCA 38188 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || |||||| | | || ||||| || || || ||||| || || || || || ||| Sbjct 38189 CCGCTAATGTTCAGAAGGGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATAAGGACG 38248 Query 7577 TTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | || |||||| | | || |||||||| || || || || || || || || | Sbjct 38249 TTCTTCTC--CGTCTTGGATTGCTGGTCGAGACCATAAGCAATGGCAGCAGCAGTAGGCT 38306 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| ||| | ||||| ||||| | | ||||| || || || | | Sbjct 38307 CGTTGATGATACGGAGAACATCAAGGCCGGCAATGGCACCAGCATCCTTGGTAGCGAGAC 38366 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | || || ||||| ||||| || || || Sbjct 38367 GCTGAGAGTCGTTGAAGTAAGCTGGCAC 38394 >seq46 Length=51760 Score = 118 bits (130), Expect = 1e-21 Identities = 188/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||||| | |||| ||| Sbjct 22405 TCGAAGTCCTCACCACCCAAGTGGGTGTCGCCAGCAGTAGCCTTGACGGCGAAGACACCA 22346 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || |||||| | | || ||||| || || || ||||| || || || || || ||| Sbjct 22345 CCGCTAATGTTCAGAAGGGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATAAGGACG 22286 Query 7577 TTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | || |||||| | | || |||||||| || || || || || || || || | Sbjct 22285 TTCTTCTC--CGTCTTGGATTGCTGGTCGAGACCATAAGCAATGGCAGCAGCAGTAGGCT 22228 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| ||| | ||||| ||||| | | ||||| || || || | | Sbjct 22227 CGTTGATGATACGGAGAACATCAAGGCCGGCAATGGCACCAGCATCCTTGGTAGCGAGAC 22168 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | || || ||||| ||||| || || || Sbjct 22167 GCTGAGAGTCGTTGAAGTAAGCTGGCAC 22140 >seq2403 Length=37943 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAG 7659 || |||||||| || | ||| || ||||| || || || || | |||||| ||| | || Sbjct 6948 TCAAGACCGTAGGCCAAAGCTGCAGCCGTAGGCTCGTTGATGACACGAAGGACA-TCGAG 7006 Query 7660 GCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 |||||||| ||| | ||||| ||||||||||| || || | |||||| ||||| || Sbjct 7007 ACCAGCAAT--TTGACCAGCATCCTTCGTCGCTTGACGCTGAGCATCGTTGAAGTATGCA 7064 Query 7718 GGGACCGTTACGACCGCGT 7736 || || || ||||| |||| Sbjct 7065 GGTACTGTAACGACGGCGT 7083 >seq144 Length=45530 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCA 7658 |||||||||||| || | ||| || || || || || || || | ||||| |||| | | Sbjct 20100 ATCGAGACCGTATGCCAGAGCTGCAGCTGTAGGCTCGTTGATGACACGAAGGACA-TCGA 20042 Query 7659 GGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 | |||||||| ||| | ||||| || || ||||| ||||| | |||||| ||||| || Sbjct 20041 GACCAGCAAT--TTGACCAGCATCCTTGGTTGCTTGACGTTGAGCATCGTTGAAGTATGC 19984 Query 7717 CGGGACCGTTACGACCGCGT 7736 || || || ||||| |||| Sbjct 19983 AGGTACTGTAACGACGGCGT 19964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635061990631960