Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1717 132 6e-26 seq2640 123 3e-23 seq1491 84.2 3e-11 >seq1717 Length=72410 Score = 132 bits (146), Expect = 6e-26 Identities = 167/224 (75%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 102112 TTCCATGTATTCAAAAGAAAG-CGGATTGGGCTATGAAGTGG-TTTGATACAA--AGTCG 102167 ||||||| || |||| | ||| |||||||||| |||||||| ||| |||| | ||| Sbjct 62664 TTCCATGCAT-CAAACGTAAGGCGGATTGGGCACTGAAGTGGATTTCCGACAAGCAATCG 62722 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 ||||||| ||||| || | || || || ||| ||||||||||||||||||||| Sbjct 62723 A---CCTTTGCCGAGCGTCTGGTTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGT 62779 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||||| || || | ||| | |||||||| || |||||||| ||||| |||||| Sbjct 62780 TCCTTCGCTGCCATCTTCTGGATGAAGAAGCGTGGCCTCATGCCTGGTCTTACTTTCTCC 62839 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||| ||||| ||||| | ||| || ||||| Sbjct 62840 AACGAGCTCATCAGCCGTGATGAGGGCATGCACACCGACTTTGC 62883 >seq2640 Length=24278 Score = 123 bits (136), Expect = 3e-23 Identities = 371/561 (66%), Gaps = 19/561 (3%) Strand=Plus/Plus Query 101782 TCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCT 101841 ||||| || | ||||||||||| || | ||||||||||| ||| | || |||| Sbjct 17054 TCTGGCAAATGTATAAGAAGGCCGAAGCTTCTTTCTGGACTGCTGAGGAGATGGACCTCT 17113 Query 101842 CAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAA-GAAATTCATAAAAT-- 101898 | ||||| || |||| |||| || | | ||||| ||| || ||| ||| || Sbjct 17114 CTAAGGACCTGCACGACTGGACGAA-CAAGATGAA--TGACAACGAACGTCACTTTATCT 17170 Query 101899 ---ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACA 101955 || ||||||| ||||| |||| || || || || || |||||| || | | Sbjct 17171 CTCACGTCCTGGCTTTCTTCGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTTGAGC 17230 Query 101956 ACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATA 102015 || | | || || ||| | | || || | | ||||| | || || | |||| Sbjct 17231 GTTTCTCCAACGAAGTTCAAGCAGCGGAGGCTCGTTGCTTCTACG-GTTTCCAGATCATG 17289 Query 102016 ATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGT 102074 ||| | | | || ||||||||| |||||| || | || ||| ||| Sbjct 17290 ATGGAGAACATCCACTCAGAGACATACTCGCTACTCATCGATACATACATTCGGGACCCC 17349 Query 102075 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAG-C 102133 || ||| | | || || || || || | || ||||||| || ||| | ||| | Sbjct 17350 GCCGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGCAT-CAAGCGTAAGGC 17408 Query 102134 GGATTGGGCTATGAAGTGG-TTTGATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTT 102190 |||||||| |||||||| ||| |||| |||| ||||||| ||||| || | Sbjct 17409 CGATTGGGCACTGAAGTGGATTTCCGACAAGCAGTCAA---CCTTTGCCGAGCGTCTAGT 17465 Query 102191 CGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCT 102250 || || || ||| |||||||||||||||||||| |||||| ||||| | ||| | Sbjct 17466 TGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGCTCCTTCGCTGCTATCTTCTGGAT 17525 Query 102251 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 102310 || ||||| ||||| ||||| ||||| |||||||||||| |||||| ||||| || Sbjct 17526 GAAAAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCCAACGAACTTATCAGCCGTGATGA 17585 Query 102311 GGGACTCCACCAAGAGTTTGC 102331 || | ||| || ||||| Sbjct 17586 AGGCATGCACACCGACTTTGC 17606 >seq1491 Length=118181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| || || | ||||| || || ||| |||||||| || ||| |||||| ||||| Sbjct 64735 CTTTCCGCGCAACGGGAACACGCCAAAGTTGTCGCGACCGACGACACCGAGACCGGCAAC 64794 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG--CCAGATTGT 177028 ||||||| || || || ||||| || |||| |||||||||||| ||| | | | | Sbjct 64795 GGCGAGCGCCTTGGCGGAGTCACCTTCGGTCAGGATGAGTGTACATTTGCTCGCGTTCCT 64854 Query 177029 GCCGTACCCGCCTTGTTCGCATCATCCAATTTGG 177062 ||| ||| || ||||| ||||| || | |||| Sbjct 64855 GCC--ACCAGCATTGTTTGCATCGTCGAGCTTGG 64886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620673194981680