Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2640 109 6e-19 seq1717 104 3e-17 >seq2640 Length=24278 Score = 109 bits (120), Expect = 6e-19 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | || ||||| ||| |||||||| || |||||| || || Sbjct 17606 GCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGACCG 17547 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| ||||| |||| ||| | ||||| ||| || || |||||||||||| Sbjct 17546 GGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAGATA 17487 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGT-GTCA 117450 ||||||||| || || |||| || |||||||| |||| |||| |||| | | Sbjct 17486 CCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGG---TTGACTGCTTGTCGGAA 17430 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 | ||| |||| |||||| | ||||| || || ||||| | ||| Sbjct 17429 ATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGT 17383 >seq1717 Length=72410 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | |||||||| ||| || || || || ||||| || || Sbjct 62883 GCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTAAGACCA 62824 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||||| ||| | || || ||| || || |||||||||||| Sbjct 62823 GGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATA 62764 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452 ||||||||| || || |||| || |||||||| |||| ||| |||| | || Sbjct 62763 CCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGG-TCGATTGCTTGTCGGAAAT 62705 Query 117453 CCATTTCATTGCCCATTTCGCCTT 117476 ||| |||| |||||| | |||||| Sbjct 62704 CCACTTCAGTGCCCAATCCGCCTT 62681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589915024515560