Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq557 107 1e-18 seq2729 104 2e-17 seq1723 89.7 3e-13 seq1796 87.8 1e-12 >seq557 Length=42797 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34774 CCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 ||||||||| ||||| || ||||| |||||||| || || || | || | || || | Sbjct 23692 CCAAGTGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAA 23751 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| || ||||| || || || || || ||||| | || | ||||||||||| | Sbjct 23752 GCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGA 23811 Query 34894 TCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || ||||||| || || ||| || || | ||| ||||| Sbjct 23812 TCTTCGCCTTAAC--AT--TATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTC 23867 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||| ||||| || |||||||||||| Sbjct 23868 TTACCCGTGAGGGTCTTGACGAAGATCTGCATA 23900 >seq2729 Length=38494 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34774 CCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 ||||||||| || || || ||||| || || ||||| || || | || | || || | Sbjct 369 CCAAGTGAAGGGTACTCTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAA 310 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| ||||| || || || || || || ||||| | || | || |||||||| | Sbjct 309 GCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGA 250 Query 34894 TCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || ||||||| ||| || ||| || || | ||| || || Sbjct 249 TCTTCGCCTTGAC--AT--TATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTC 194 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||||||||| || |||||||||||| Sbjct 193 TTACCCGTGAGAGTCTTGACGAAGATCTGCATA 161 >seq1723 Length=56463 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| || | || |||| || ||||| |||||||| || Sbjct 44462 TCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 44403 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || ||||| || ||| Sbjct 44402 ATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACGTTG 44343 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | || ||||| || |||||||| ||||| || Sbjct 44342 TCGATCGTGTCTGATGACTCGACCTCCAACGTGATGGTCTTACCCGTGAGGGTCTTGACG 44283 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 44282 AATATTTGCATA 44271 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||||||||| || | | | || | || || Sbjct 44024 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGCCCGTCCTCG 43965 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| || | || | ||||||||||| Sbjct 43964 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGG 43905 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 43904 ATCTTGGCCTTGACGTTATCAATGGTGTCGGACGACTCGACCTCAAGGGTAATAGTCTTG 43845 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| |||||||| || |||||||||||| Sbjct 43844 CCCGTCAGAGTCTTGACGAAGATCTGCATA 43815 >seq1796 Length=58898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| || |||||||| | || |||| || || || Sbjct 51520 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCTTCGAGTTG 51579 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||||||||| || || ||||| || || | || | |||||||| || |||||| Sbjct 51580 CTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTATCCTGAATCTT 51639 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 || | | | | ||||||| || | || || |||| || || || || | Sbjct 51640 -TGCCTTA---ACGTTATCGATGGTGTCGGATGATTCCACTTCGAGAGTGATCGTCTTGC 51695 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| |||||||||||||| |||||| Sbjct 51696 CGGTGAGGGTCTTCACAAAGATTTGCATA 51724 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| |||||||| || | || | || || ||||| |||||||| || Sbjct 51304 TTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCGGCGAA 51363 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | |||||||| || ||||| |||||| Sbjct 51364 AATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACGTT 51423 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | ||| || || | || || || || |||||||| || || || Sbjct 51424 GTCGATCGTGTCTGATGACTCGACCTCCAACGTAATAGTCTTACCCGTGAGGGTTTTGAC 51483 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 51484 AAATATTTGCAT 51495 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| ||||| || | | | || | || || Sbjct 51743 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGCCCGTCCTCA 51802 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || |||||||| || | || | ||||||||||| Sbjct 51803 AGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGG 51862 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | |||||| || | ||| || || || Sbjct 51863 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGTGATAGTCTTG 51922 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || ||||||||||||||| Sbjct 51923 CCCGTCAGAGTTTTGACAAAGATCTGCATA 51952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324598312226232