Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1717 111 2e-19 seq2640 102 9e-17 >seq1717 Length=72410 Score = 111 bits (122), Expect = 2e-19 Identities = 352/544 (65%), Gaps = 5/544 (1%) Strand=Plus/Minus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 ||||| || | || || | || || || || || | ||||||||| || || | || Sbjct 62865 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATGAGGCCACGCTTC 62806 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || | |||||| || | ||| || || ||||| ||||| ||||| || || || || || Sbjct 62805 TTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 62746 Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCA 19161 ||||| || | || || | | | | || | |||||| |||||||||||||| Sbjct 62745 GCAACCAGACGCTCGGCAAAGGTCGATTGCTTGTCGGAAATCCACTTCAGTGCCCAATCC 62686 Query 19162 GCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCT 19221 ||||| ||| | ||||| || ||||| | || || || || ||||||| | Sbjct 62685 GCCTTACGTTTGATGCATGGAATAGTCTCGACAGCATCGAACAGTCGGGTACGCTCGGCG 62626 Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281 | || || |||| ||| || | || ||| | ||||| || || || || || Sbjct 62625 GGGTCCCGAATGTATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCTCCATC 62566 Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTT 19341 ||||| || ||||| || || | || || | | ||| ||||| | | || | Sbjct 62565 ATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCTGCCTGAACTTCGTTGGAGAAACGC 62506 Query 19342 TCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTA 19401 || || | || ||||| || || || || ||| ||||| || || | || || Sbjct 62505 TCTACGAGGTTCTCATTTACGATACCGTCCGAAGCAGCAAAGAAAGCCAGAACGTGGGAG 62446 Query 19402 ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATCATTAATATCTTTAGATAA 19457 |||||||| || | || || || | |||| || | | ||| ||||| | Sbjct 62445 ATAAAATGACGCTCGT-TGTCATTCATCCTGTTCGTCCAGTCGTGCAGATCCTTAGAGAG 62387 Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 || | ||||| | ||||| |||||||| || || ||||| ||||| | ||| || | Sbjct 62386 GTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTG 62327 Query 19518 ACGA 19521 |||| Sbjct 62326 ACGA 62323 >seq2640 Length=24278 Score = 102 bits (112), Expect = 9e-17 Identities = 350/542 (65%), Gaps = 8/542 (1%) Strand=Plus/Minus Query 18994 CTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAAT 19053 || || | ||| || || || || | ||| ||||| || || | ||||| | |||||| Sbjct 17576 CTGATAAGTTCGTTGGAGAAGGTAAGACCGGGCATAAGACCACGCTTTTTCATCCAGAAG 17517 Query 19054 ATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTT 19113 |||| ||| || || ||||| ||||| ||||| || || || || || |||||||| | Sbjct 17516 ATAGCAGCGAAGGAGCCAGAGAAGAAGATACCCTCCACAGCGGCGAAGGCAACTAGACGC 17457 Query 19114 TCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTT 19173 || || | | | | || | |||||| |||||||||||||| ||||| || Sbjct 17456 TCGGCAAAGGTTGACTGCTTGTCGGAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTG 17397 Query 19174 ACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACA 19233 | ||||| || ||||| | || || || || ||||||| | | || || Sbjct 17396 ATGCATGGAATAGTCTCGACAGCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATG 17337 Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| ||| || | || ||| | ||||| || || || || || ||||| || Sbjct 17336 TATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAA 17277 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 ||||| || || | || || | | || ||||| | | || | || || | || Sbjct 17276 CCGTAGAAGCAACGAGCCTCCGCTGCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTC 17217 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || || || || ||| || || || || | || || ||||| || | Sbjct 17216 TCATTTACGATACCGTCCGAAGCAGCGAAGAAAGCCAGGACGTGAGAGATAAAGTGACGT 17157 Query 19414 TCATCTGAGGTTAAT----GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTC 19469 || | || || || | |||| || | | || ||||| | || | || || Sbjct 17156 TCGT-TGTCATTCATCTTGTTCGTCCAGTCGTGCAGGTCCTTAGAGAGGTCCATCTCCTC 17098 Query 19470 AACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT--CACG-ATATTG 19526 | | ||||| |||||||| || || || |||||||| | ||| || | |||| |||| | Sbjct 17097 AGCAGTCCAGAAAGAAGCTTCGGCCTTCTTATACATTTGCCAGATCTGACACGAATATGG 17038 Query 19527 TA 19528 || Sbjct 17037 TA 17036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562046131895160