Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1796 100 2e-15 seq2120 98.7 8e-15 seq46 98.7 8e-15 seq144 96.9 3e-14 >seq1796 Length=58898 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || || |||||||| ||| | ||| || |||||||| | ||||| | Sbjct 51506 AGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGAAAGAGTGC 51563 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| ||||| ||||||||||| || || | ||| |||||||| || || || | Sbjct 51564 GACCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGGGATACCCT 51623 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | ||||| ||||| ||| || || || || || || | ||| | || ||||||| Sbjct 51624 CCTTATCCTGAATCTTTGCCTTAACGTTATCGATGGTGTC-GGATGATTCCACTTCGAGA 51682 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || || || || || || || ||||||||| Sbjct 51683 GTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCATA 51724 >seq2120 Length=51513 Score = 98.7 bits (108), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || ||||| || || || ||||| || |||| ||||| || |||||||| ||||| Sbjct 38394 GTGCCAGCTTACTTCAACGACTCTCAGCGTCTCGCTACCAAGGATGCTGGTGCCATTGCC 38335 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| ||||||| ||||| ||||| || |||||||||||||| |||| ||||| || Sbjct 38334 GGCCTTGATGTTCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATTGCTTATGGTCTC 38275 Query 550532 GA 550533 || Sbjct 38274 GA 38273 >seq46 Length=51760 Score = 98.7 bits (108), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || ||||| || || || ||||| || |||| ||||| || |||||||| ||||| Sbjct 22140 GTGCCAGCTTACTTCAACGACTCTCAGCGTCTCGCTACCAAGGATGCTGGTGCCATTGCC 22199 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| ||||||| ||||| ||||| || |||||||||||||| |||| ||||| || Sbjct 22200 GGCCTTGATGTTCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATTGCTTATGGTCTC 22259 Query 550532 GA 550533 || Sbjct 22260 GA 22261 >seq144 Length=45530 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || ||||| ||||| || || || | ||||||||||| || || |||||||| | ||| Sbjct 19975 ACAGTACCTGCATACTTCAACGATGCTCAACGTCAAGCAACCAAGGATGCTGGTCAAATT 20034 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || |||| |||||| | ||||| || ||||| ||||| || || ||||| || Sbjct 20035 GCTGGTCTCGATGTCCTTCGTGTCATCAACGAGCCTACAGCTGCAGCTCTGGCATACGGT 20094 Query 550529 CTTGAT 550534 || ||| Sbjct 20095 CTCGAT 20100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028824323055310