Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1717 232 1e-55 seq2640 215 1e-50 >seq1717 Length=72410 Score = 232 bits (256), Expect = 1e-55 Identities = 388/559 (69%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| |||||||| |||||| ||| || || |||||||||||| ||||||||| Sbjct 62894 AGAGCAAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGA 62835 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | ||||||||||||| || | || || | |||||| || || ||||| || |||| Sbjct 62834 AAGTAAGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAG 62775 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| |||||||| || ||||| || || | ||| | || | | | || Sbjct 62774 AGAAGAAGATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGGTCGATTGCT 62715 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| || ||||| || ||||| || ||||| ||||||||||| || ||||| | Sbjct 62714 TGTCGGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGA 62655 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTA---GTGAGCAGCT 48419 || ||| || | | ||| | | |||| || || ||| |||| ||| Sbjct 62654 CAGCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGC- 62596 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||||| | ||||| || ||||||||| ||||||||| | | Sbjct 62595 --GAGTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAG 62538 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| |||| ||||| ||||||| | ||| | || |||||||| || || || | Sbjct 62537 CCTCCGCTGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGT 62478 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | |||||||||||||| || || || || | ||||| |||||||||| | | Sbjct 62477 CCGAAGCAGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGTTGTCATTCATCC 62418 Query 48600 CAT---TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 | ||||| | || | || || ||||||| ||||| |||||||||| || | Sbjct 62417 TGTTCGTCCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAG 62358 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || ||||||||||| Sbjct 62357 CTTCGGCCTTTTTGTACAT 62339 >seq2640 Length=24278 Score = 215 bits (238), Expect = 1e-50 Identities = 331/471 (70%), Gaps = 6/471 (1%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| |||||||| |||||| |||||| || |||||||| || ||||||||| Sbjct 17617 AGAGCAAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGA 17558 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||||| ||||| | || | || ||| | |||||| || || ||||| ||||||| Sbjct 17557 AGGTAAGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAG 17498 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| |||||||| || ||||| || || | ||| | || | | | || Sbjct 17497 AGAAGAAGATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGGTTGACTGCT 17438 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| || ||||| || ||||| || ||||| |||||||||||| || ||||| | Sbjct 17437 TGTCGGAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGA 17378 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTA---GTGAGCAGCT 48419 || ||| || | | ||| | | |||| || || ||| |||| ||| Sbjct 17377 CAGCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGC- 17319 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||||| | ||||| || ||||||||| ||||||||| | | Sbjct 17318 --GAGTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAG 17261 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| | || ||||| ||||||| | ||| | || |||||||| || || || | Sbjct 17260 CCTCCGCTGCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGT 17201 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 | |||||||| ||||| || ||||| || | || || || ||||||| Sbjct 17200 CCGAAGCAGCGAAGAAAGCCAGGACGTGAGAGATAAAGTGACGTTCGTTGT 17150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931428945736960