Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1717 226 5e-54 seq2640 168 1e-36 seq1739 105 1e-17 seq2085 91.5 3e-13 >seq1717 Length=72410 Score = 226 bits (250), Expect = 5e-54 Identities = 401/572 (70%), Gaps = 17/572 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| || || |||||| ||||||||||| || || Sbjct 62330 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCTTTCTGGACTGCCGAAGAGATGGACCTC 62389 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCT--ATCCA--AAGACGAGCAGCATTTTCTCAA 25592 | ||||| || ||| |||| ||| | || | | |||||| |||||| || Sbjct 62390 TCTAAGGATCTGCACGACTGG-ACGAACAGGATGAATGACAACGAGCGTCATTTTATCTC 62448 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| |||| |||||||| || || || ||||| || || ||||| || ||| | Sbjct 62449 CCACGTTCTGGCTTTCTTTGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTAGAGCG 62508 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| ||| ||||| ||| | |||||| || ||||||||||||||||| || Sbjct 62509 TTTCTCCAACGAAGTTCAGGCAGCGGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 62568 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT--GCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || || | ||||| ||| || || | | || ||| || |||||| ||| | Sbjct 62569 GGAGAACATCCACTCAGAGACATACTCGCTACTCATC-GAT-ACATACATTCGGGACCCC 62626 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||||| | || ||||| | ||| ||||| || || ||||||| | |||||| Sbjct 62627 GCCGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGCATCAAACGTAAGGCG 62686 Query 25831 CGGTGGGCCATGAAGTGGAT---CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 ||||| |||||||||| | ||| || | || || |||| |||||| ||||| Sbjct 62687 GATTGGGCACTGAAGTGGATTTCCGACAAGCA-ATCG--ACCTTTGCCGAGCGTCTGGTT 62743 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 ||||| || ||||||||||| ||||| ||| ||||| || || |||||||||||| | Sbjct 62744 GCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGATG 62803 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || || |||||| || || |||||| |||||||||||||||||| | || || Sbjct 62804 AAGAAGCGTGGCCTCATGCCTGGTCT-TACTTTCTCCAACGAGCTCATCAGCCGTGATGA 62862 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||| | |||| || ||||| ||| |||||| Sbjct 62863 GGGCATGCACACCGACTTTGCTTGCTTGCTCT 62894 >seq2640 Length=24278 Score = 168 bits (186), Expect = 1e-36 Identities = 384/571 (67%), Gaps = 15/571 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||| |||||||| || || |||||| || || ||||| || || Sbjct 17053 ATCTGGCAAATGTATAAGAAGGCCGAAGCTTCTTTCTGGACTGCTGAGGAGATGGACCTC 17112 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAG----ACGAGCAGCATTTTCTCAA 25592 | |||||| || ||| |||| ||| | | || |||| | || ||| || Sbjct 17113 TCTAAGGACCTGCACGACTGG-ACGAACAAGATGAATGACAACGAACGTCACTTTATCTC 17171 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| |||| ||||| || || || || ||||| || || ||||| || ||| | Sbjct 17172 TCACGTCCTGGCTTTCTTCGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTTGAGCG 17231 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| ||| ||||| || | |||||| || ||||||||||||||||| || Sbjct 17232 TTTCTCCAACGAAGTTCAAGCAGCGGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 17291 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT--GCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || || | ||||| ||| || || | | || ||| || |||||| ||| | Sbjct 17292 GGAGAACATCCACTCAGAGACATACTCGCTACTCATC-GAT-ACATACATTCGGGACCCC 17349 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||||| | || ||||| | ||| ||||| || || |||||||| | ||||| Sbjct 17350 GCCGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGCATCAAGCGTAAGGCC 17409 Query 25831 CGGTGGGCCATGAAGTGGAT---CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 ||||| |||||||||| | ||| ||| | || |||| |||||| || || Sbjct 17410 GATTGGGCACTGAAGTGGATTTCCGACAAGCAGT---CAACCTTTGCCGAGCGTCTAGTT 17466 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 ||||| || ||||||||||| ||||| ||| || || || || || ||||||||| | Sbjct 17467 GCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGCTCCTTCGCTGCTATCTTCTGGATG 17526 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || || |||||||| || ||| |||||||| || |||||| | || || Sbjct 17527 AAAAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCCAACGAACTTATCAGCCGTGATGAA 17586 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 || | |||| || ||||| ||| |||||| Sbjct 17587 GGCATGCACACCGACTTTGCTTGCTTGCTCT 17617 >seq1739 Length=117728 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 || ||||||| || || ||||| |||||| ||||||| |||||||| |||||| Sbjct 51466 AGAGCAGCGTAATAAATCGTCTCGAAGATCTGAATGTTGAGCTGCTTGGCCTGGGGAGAG 51525 Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539 || ||||||||||| | ||| |||| || || ||||| || |||| ||||||| Sbjct 51526 TCAAATGGCATACGCAGGGCCATGAAGGCGTCCGCGAGACCCTGCACACCGACACCGATG 51585 Query 221540 GGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 || | ||| | ||| ||| |||| || |||||| ||||||| ||||||||||||| Sbjct 51586 GGGCGGTGACGGAAGTTAGAA-CGGCGAGCCTCTGGCGTGGGATAATAGTTGACGTCGAT 51644 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 ||||| || |||||| || || | || | ||| | || ||| | | |||| |||| Sbjct 52178 AAGAGATCACAGATCCAGAGAGCATAGAACAAATCACGGGCACGCAGTTGCTCCTTGCCG 52237 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 | || |||||||| || | |||||||| |||||| ||||||| ||||| || |||| Sbjct 52238 TGATTCTTCCTCAGGTCGAGGAACTCAAAGATGTCATCGTGCCATGGCTCGAGGTAGATA 52297 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | || ||||| || || ||||||||||| || || Sbjct 52298 GCAAACGCTCCGGGACGTTTATTGCCACCCTGGTCGAC 52335 >seq2085 Length=44481 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 || || |||| || || || || |||||| ||||||| |||||||| || || Sbjct 22900 AGAGCGGCGTAATAAATTGTTTCGAAGATCTGAATGTTGAGCTGTTTGGCCTCAGGGGAG 22959 Query 221480 GTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||| ||||||||||| | |||||| |||| || || |||||||| |||| |||||| Sbjct 22960 TCGAATGGCATACGCAGGGCCATGAAAG-CGTCCGCAAGACCCTGTACACCGACACCGAT 23018 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 ||| | ||| | ||| ||| |||| || || ||| |||||| |||||||||||| Sbjct 23019 GGGGCGGTGGCGGAAGTTAGAA-CGGCGAGCCTCCGGCGTGGGATAGTAGTTGACGTCGA 23077 Query 221598 T 221598 | Sbjct 23078 T 23078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928741245415360