Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2729 96.9 2e-14 seq1796 96.9 2e-14 seq1723 93.3 3e-13 seq144 87.8 1e-11 >seq2729 Length=38494 Score = 96.9 bits (106), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| ||||| || || | ||| || |||| || || | || |||| Sbjct 368 CAAG-TGAAGGGTACTCTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAA 310 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | ||||||||||| || || ||||| ||||| || || ||||| ||||||||||| || | Sbjct 309 GCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGA 250 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 |||| |||||| || || || |||| | || ||||| || || |||| Sbjct 249 TCTTCGCCTTGACATTATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTTAC 190 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||||||||| ||||| || || Sbjct 189 CCGTGAGAGTCTTGACGAAGATCTG 165 >seq1796 Length=58898 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || || ||||| || || || | || ||||| | ||||| Sbjct 51502 ACGCAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGT 51561 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| ||||||||||| ||||| || ||||||||||||||||| || || || Sbjct 51562 GCGACCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGGGATACC 51621 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || ||||||||| || || || || || || | || | | ||| | Sbjct 51622 CTCCTTATCCTGAATCTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCA-CTTCGA 51680 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| ||||| || || ||||| Sbjct 51681 GAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTG 51720 >seq1723 Length=56463 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||||||||| ||||| ||||| || ||||| || ||||| || |||||| Sbjct 43970 TCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTG 43911 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| ||||| ||||| || || | | | | ||||||||||| Sbjct 43910 TCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGACGACTCGA-CCTCAAGGGTAAT 43852 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| || || Sbjct 43851 AGTCTTGCCCGTCAGAGTCTTGACGAAGATCTG 43819 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || || ||||| || ||| || | || ||||| | ||||| Sbjct 44265 ACGCAGACGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGAAAGAGT 44206 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| ||||||||||| || || || ||||||||||||||||| || || || Sbjct 44205 GCGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGGGGATACC 44146 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || || || ||| || || || || || || | || | | ||| | Sbjct 44145 CTCCTTATCCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCA-CTTCGA 44087 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || |||||||| ||||| || || ||||| Sbjct 44086 GGGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTG 44047 >seq144 Length=45530 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || || ||||| || || ||| |||||||||||||||| || ||||| || || Sbjct 19973 TTACAGTACCTGCATACTTCAACGATGCTCAACGTCAAGCAACCAAGGATGCTGGTCAAA 20032 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| |||| | ||| | || || || || ||||| || || || || || | Sbjct 20033 TTGCTGGTCTCGATGTCCTTCGTGTCATCAACGAGCCTACAGCTGCAGCTCTGGCATACG 20092 Query 474864 GTCTTGATAAGAATTCTGACAA 474885 |||| ||| ||||||||| Sbjct 20093 GTCTCGAT---CGTTCTGACAA 20111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267796620815012