Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2640 129 7e-24 seq1717 120 4e-21 seq1587 95.1 1e-13 seq1491 95.1 1e-13 >seq2640 Length=24278 Score = 129 bits (142), Expect = 7e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 868684 GACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 868743 ||| | |||||||| ||| || |||||| |||||| ||||| ||||| || | || Sbjct 17960 GACATTCGCCTTGGTGTAATCCGAGACGCGCTTCTCGAAGAAGTTTGTCTTCCCTTGAAG 17901 Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 |||||||| ||||| | ||| ||||||| | ||||| | || ||| || || Sbjct 17900 CGAGATCATGTCCATAAAGTCGAAGGGGTTGGTTGAGTTGTAATATTTGTCGTTGCCCAG 17841 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 || ||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| Sbjct 17840 AGAGATGAGTAGACGGTCAGCGACGAACTCGATGTACTGGCACATGAGATCGGCGTTCAT 17781 Query 868864 GCCGATGAG 868872 |||||| || Sbjct 17780 GCCGATAAG 17772 Score = 109 bits (120), Expect = 7e-18 Identities = 140/191 (73%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| || || ||||| | ||||||| |||| || |||||||| || || ||||| Sbjct 17588 CCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGACCGGGCATAAGACCACGCTTT 17529 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||| ||||| || ||| ||| ||||| ||||| ||||| || ||||| ||| Sbjct 17528 TTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 17469 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCC 869356 | | || |||||||||||| || || || ||||| | |||||||||| ||| Sbjct 17468 GCAACTAGACGCTCGGCAAAG--GTTGA----CTGCTTGTCGGAAATCCACTTCAGTGCC 17415 Query 869357 CAGTCGGCCTT 869367 || |||||||| Sbjct 17414 CAATCGGCCTT 17404 Score = 100 bits (110), Expect = 3e-15 Identities = 176/255 (69%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||| || |||| Sbjct 17306 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCTGCTTGA 17247 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || ||| || | | |||||||| ||||| ||||| || ||||| Sbjct 17246 ACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGTCCGAAGCAGCGAAG 17187 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 |||||||||||||| ||||||||| || |||| ||| | | | | ||||| Sbjct 17186 AAAGCCAGGACGTGAGAGATAAAGTGACGTTCGTTGTCATTCATCTTGTTCGTCCAGT-- 17129 Query 869810 ACGGTGTCGGCGCT----GAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTT 869865 ||| || || |||||||| |||||| || ||||||| || || |||||||| Sbjct 17128 --CGTGCAGGTCCTTAGAGAGGTCCATCTCCTCAGCAGTCCAGAAAGAAGCTTCGGCCTT 17071 Query 869866 TTTGTACATCTCCCA 869880 || ||||| | ||| Sbjct 17070 CTTATACATTTGCCA 17056 >seq1717 Length=72410 Score = 120 bits (132), Expect = 4e-21 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 868684 GACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 868743 ||||| |||||||| ||| || |||||| |||||| ||||| |||||||| | || Sbjct 63237 GACGTTCGCCTTGGTGTAATCCGAGACGCGCTTCTCGAAGAAGTTTGTCTTGCCTTGAAG 63178 Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 ||| |||| ||||| | ||| ||||||| | ||||||| || ||| || || Sbjct 63177 CGAAATCATGTCCATGAAGTCGAAGGGGTTGGTTGAGTTGTAGTATTTGTCGTTACCCAG 63118 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 || ||| || ||||| || || || |||||||| |||||||| || |||||||||| Sbjct 63117 AGAGATGAGTAGACGGTCAGCAACGAATTCGATGTATTGGCACATCAGATCGGCGTTCAT 63058 Query 868864 GCCGATGAG 868872 |||||| || Sbjct 63057 GCCGATAAG 63049 Score = 100 bits (110), Expect = 3e-15 Identities = 138/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || || || ||||| | |||||| || | || || ||||||||||| |||||| Sbjct 62865 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATGAGGCCACGCTTC 62806 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||| |||||||| ||| || ||||| ||||| ||||| || ||||| ||| Sbjct 62805 TTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 62746 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCC 869356 | | || |||||||||||| ||||| | ||||| | |||||||||| ||| Sbjct 62745 GCAACCAGACGCTCGGCAAAG--GTCGA----TTGCTTGTCGGAAATCCACTTCAGTGCC 62692 Query 869357 CAGTCGGCCTT 869367 || || ||||| Sbjct 62691 CAATCCGCCTT 62681 >seq1587 Length=67671 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GT 19110 |||||||||||| |||||||| ||| || | |||| | || || ||||| || || Sbjct 14207 CATCGGCGGCACTGTGACGTGTGTGATACGTGGCCTGCCTTCTGGACTTGGCGAACCAGT 14148 Query 19111 GCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGG 19170 | ||||||||| |||| || |||||||| || || ||||| || ||||| || ||||||| Sbjct 14147 G-TTTGACAAGTTCGAAGCTGCGCTCGCGCATGCGATGCTCTCCATCCCCGCTACCAAGG 14089 Query 19171 GATTCGAGATTGGC 19184 |||||| | ||| Sbjct 14088 CGTTCGAGGTCGGC 14075 >seq1491 Length=118181 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GT 19110 |||||||||||| || || || ||| ||| | |||| | || || ||||| || || Sbjct 68015 CATCGGCGGCACTGTCACATGTGTGATTCGTGGCCTGCCTTCTGGACTTGGCGAACCAGT 67956 Query 19111 GCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGG 19170 | ||||||||| |||| || |||||||| || || ||||| || ||||| |||||||||| Sbjct 67955 G-TTTGACAAGTTCGAAGCTGCGCTCGCGCATGCGATGCTCTCCATCCCCGCCACCAAGG 67897 Query 19171 GATTCGAGATTGGC 19184 |||||| | ||| Sbjct 67896 CGTTCGAGGTCGGC 67883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106407265092323