Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2640 147 3e-29 seq1717 140 5e-27 >seq2640 Length=24278 Score = 147 bits (162), Expect = 3e-29 Identities = 233/328 (71%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || || ||||| | ||||||| ||| || |||||||| || || ||||| Sbjct 17588 CCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGACCGGGCATAAGACCACGCTTT 17529 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| ||| ||| ||| ||||| ||||| ||||| || ||||| ||| Sbjct 17528 TTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 17469 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || || ||||||||||| || | | || | | |||||||||| ||||| Sbjct 17468 GCAACTAGACGCTCGGCAAAGGTTGACTG---CTTGTCGGAAATCCACTTCAGTGCCCAA 17412 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC-GCGAA-AGAGGTGGTCCTTCT 794578 || ||||| | | | | || | || |||| || |||| || | ||| | || Sbjct 17411 TCGGCCTTACGCTTGATGCATGGAATAGTCTCGACAGCATCGAACAGTCG-GGTAC-GCT 17354 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | |||||| | ||| || |||||||| |||||||| ||||||||||||||||| | Sbjct 17353 CGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCT 17294 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||||||||| || || ||||| Sbjct 17293 CCATCATGATCTGGAAACCGTAGAAGCA 17266 Score = 107 bits (118), Expect = 3e-17 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 793898 CGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 793957 |||||||| || || |||||| |||||| ||||| ||||| || | |||||||| Sbjct 17954 CGCCTTGGTGTAATCCGAGACGCGCTTCTCGAAGAAGTTTGTCTTCCCTTGAAGCGAGAT 17895 Query 793958 CAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGC 794017 || ||||| | ||| ||||||| | ||| | || ||| || || || Sbjct 17894 CATGTCCATAAAGTCGAAGGGGTTGGTTGAGTTGTAATATTTGTCGTTGCCCAGAGAGAT 17835 Query 794018 AAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGAT 794077 || || ||||| |||||||| || ||||||||||||||||| |||||||||||||||| Sbjct 17834 GAGTAGACGGTCAGCGACGAACTCGATGTACTGGCACATGAGATCGGCGTTCATGCCGAT 17775 Query 794078 GAGCGCCACGGGCAGCG 794094 || ||||||| || Sbjct 17774 AAGGCTAACGGGCAACG 17758 >seq1717 Length=72410 Score = 140 bits (154), Expect = 5e-27 Identities = 236/332 (71%), Gaps = 15/332 (5%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCT-AAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 || || || || ||||| | |||||| |||| | || || ||||||||||| ||||| Sbjct 62865 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTA-AGACCAGGCATGAGGCCACGCTT 62807 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||| ||||||||| ||| || ||||| ||||| ||||| || ||||| || Sbjct 62806 CTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATACCCTCCACAGCGGCGAA 62747 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGC 794516 | | || || ||||||||||| ||| | | |||| | |||||||||| || Sbjct 62746 GGCAACCAGACGCTCGGCAAA--GGTCGA----TTGCTTGTCGGAAATCCACTTCAGTGC 62693 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC-GCGAA-AGAGGTGGTCC 794574 ||| || ||||| | | | || | || |||| || |||| || | ||| | Sbjct 62692 CCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACAGCATCGAACAGTCG-GGTAC 62634 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 |||| | |||||| | ||| || |||||||| |||||||| ||||||||||||||| Sbjct 62633 -GCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATG 62575 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || ||||||||| || || ||||| Sbjct 62574 TTCTCCATCATGATCTGGAAACCGTAGAAGCA 62543 Score = 109 bits (120), Expect = 9e-18 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||| |||||||| || || |||||| |||||| ||||| |||||||| | | Sbjct 63238 TGACGTTCGCCTTGGTGTAATCCGAGACGCGCTTCTCGAAGAAGTTTGTCTTGCCTTGAA 63179 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC-ACCC- 794008 |||| |||| ||||| | ||| ||||||| | ||||| || ||| |||| Sbjct 63178 GCGAAATCATGTCCATGAAGTCGAAGGGGTTGGTTGAGTTGTAGTATTTGTCGTTACCCA 63119 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 ||| || | || || ||||| || |||||||| ||||| |||||||| || ||||||| Sbjct 63118 GAGAGATG--AGTAGACGGTCAGCAACGAATTCGATGTATTGGCACATCAGATCGGCGTT 63061 Query 794069 CATGCCGATGAGCGCCACGGGCA 794091 ||||||||| || ||||||| Sbjct 63060 CATGCCGATAAGGCTAACGGGCA 63038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915297645290441