Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1796 109 4e-19 seq1723 102 5e-17 seq557 96.9 2e-15 seq2729 84.2 1e-11 >seq1796 Length=58898 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | || | || || ||| ||| || || ||||||||||| || Sbjct 51497 CCACCACGCAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 51556 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| ||||||||||| |||| ||| || ||||| | || Sbjct 51557 AGAGTGCGACCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGTTGTTGATCAGGGGGG 51616 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || ||| || || | ||| | || | ||||||| ||||||||| Sbjct 51617 ATACCCTCCTTATCCTGAATCTT-TGCCTTAACGTTATCGATGGTGTCGGATGATTCCAC 51675 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||| || || || | || || |||||||| |||||| Sbjct 51676 TTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCATA 51724 >seq1723 Length=56463 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | || || ||| || || || ||||||||||| || Sbjct 44271 ACCACCACGCAGACGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 44212 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||| |||||||| || |||| ||| || ||||| | || Sbjct 44211 AAGAGTGCGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGTTGATCAGGGGG 44152 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || ||||| || | ||| | || | ||||||| |||||||| Sbjct 44151 GATACCCTCCTTATCCTGGATTTT-TGCCTTAACGTTATCGATGGTGTCGGATGATTCCA 44093 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| || || || | || || |||||||| |||||| Sbjct 44092 CTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCATA 44043 >seq557 Length=42797 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601 |||| || || |||||||| || || ||||| ||||||||||||||||| |||| || | Sbjct 23692 CCAAGTGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAA 23751 Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 || || ||||| || || | |||||| || || | || | ||| || ||||| | Sbjct 23752 GCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGA 23811 Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 | ||| | | ||||| || | |||||| || || || || | || || || ||| Sbjct 23812 TCTTC-GCCTTAACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTA 23870 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || |||||||||||| Sbjct 23871 CCCGTGAGGGTCTTGACGAAGATCTGCATA 23900 >seq2729 Length=38494 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601 |||| || || || ||||| || || || ||||| || ||||| ||||| |||| || | Sbjct 369 CCAAGTGAAGGGTACTCTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAA 310 Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 || ||||| || || || | |||||| || || | || | |||||| ||||| | Sbjct 309 GCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGA 250 Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 | ||| || | ||| || | ||||| || || || || | |||||||| ||| Sbjct 249 TCTTCGCCTTGA-CATTATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTTA 191 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || |||||||||||| Sbjct 190 CCCGTGAGAGTCTTGACGAAGATCTGCATA 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328668269772480