Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1717 113 4e-20 seq2640 86.0 5e-12 >seq1717 Length=72410 Score = 113 bits (124), Expect = 4e-20 Identities = 375/569 (66%), Gaps = 22/569 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||||||||| || | || || || ||||| || ||||| | || | Sbjct 62330 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCTTTCTGGACTGCCGAAGAGATGGACCTC 62389 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG-CATTAA-AACCACAA-GAAAAACATTTTATATC 43845 |||| || | |||| | |||| || | || |||| || |||||||| || Sbjct 62390 TCTAAGGATCT-GCACGACTGGACGAACAGGATGAATGACAACGAGCGTCATTTTATCTC 62448 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 ||| |||| || |||||||| ||||| || || ||||| || | || || Sbjct 62449 CCACGTTCTGGCTTTCTTTGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGT-AGAGC 62507 Query 43906 GTTTGCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 |||| ||| |||||||| | | || || || || || || || || || || | Sbjct 62508 GTTTCTCCAACGAAGTTCAGGCAGCGGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 62567 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGC 44024 | || || || || || || | ||| || || || ||||| ||||| || | Sbjct 62568 TGGAGAACATCCACTCAGAGACATACTCGCTACTCATCGATACATACATTCGGGAC---C 62624 Query 44025 ACGAGAAGCAT---CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAA 44080 || ||| | ||| |||| |||| | || || | || ||| || |||| ||| Sbjct 62625 CCGCCGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGC-ATCAAACGTAAG 62683 Query 44081 GCAGACTGGGCCCTTAAATGGAT-----AAATTCAAATGATTCTTTTGGAGAACGACTTG 44135 || || ||||| || || ||||| | | ||| || | |||| || || || | Sbjct 62684 GCGGATTGGGCACTGAAGTGGATTTCCGACAAGCAATCGA--CCTTTGCCGAGCGTCTGG 62741 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 | || || || | |||||| || || ||||| || || || || || ||||| || ||| Sbjct 62742 TTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGA 62801 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | ||||| || || | |||||||| | || || || || ||| | || || ||||||| Sbjct 62802 TGAAGAAGCGTGGCCTCATGCCTGGTCTTACTTTCTCCAACGAGCTCATCAGCCGTGATG 62861 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | ||| | || ||| |||||||||||| Sbjct 62862 AGGGCATGCACACCGACTTTGCTTGCTTG 62890 >seq2640 Length=24278 Score = 86.0 bits (94), Expect = 5e-12 Identities = 368/569 (65%), Gaps = 22/569 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||| || || || | || || || ||||| || || || | || | Sbjct 17053 ATCTGGCAAATGTATAAGAAGGCCGAAGCTTCTTTCTGGACTGCTGAGGAGATGGACCTC 17112 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG-CATTAA-AACCACAA-GAAAAACATTTTATATC 43845 |||| ||| | |||| | |||| || | || |||| ||| || ||||| || Sbjct 17113 TCTAAGGACCT-GCACGACTGGACGAACAAGATGAATGACAACGAACGTCACTTTATCTC 17171 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 | || |||| || || ||||| ||||| || || ||||| || | ||| || Sbjct 17172 TCACGTCCTGGCTTTCTTCGCTGCTTCGGACGGTATCGTAAATGAGAACCTCGTTGAGCG 17231 Query 43906 GTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCAT 43965 || | | ||||||||| | | || || || || || || || || || || || Sbjct 17232 TTTCTCCAACGAAGTTCAAGCAGCGGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 17291 Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA 44025 || || || || || || | ||| || || || ||||| ||||| || | Sbjct 17292 GGAGAACATCCACTCAGAGACATACTCGCTACTCATCGATACATACATTCGGGAC---CC 17348 Query 44026 CGAGAAGCAT---CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAG 44081 || ||| | ||| |||| |||| | || || | || ||| || || | ||| | Sbjct 17349 CGCCGAGCGTACCCGACTGTTCGATGCTGTCGAGACTATTCCATGC-ATCAAGCGTAAGG 17407 Query 44082 CAGACTGGGCCCTTAAATGGATAAATTCA---AATGATTCT---TTTGGAGAACGACTTG 44135 | || ||||| || || ||||| ||| || | || |||| || || || | Sbjct 17408 CCGATTGGGCACTGAAGTGGAT---TTCCGACAAGCAGTCAACCTTTGCCGAGCGTCTAG 17464 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 | || || || | |||||| || || ||||| || || || || || || || || ||| Sbjct 17465 TTGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGCTCCTTCGCTGCTATCTTCTGGA 17524 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | || || || ||| | ||||| || | || || || || || | || || ||||||| Sbjct 17525 TGAAAAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCCAACGAACTTATCAGCCGTGATG 17584 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| | || ||| |||||||||||| Sbjct 17585 AAGGCATGCACACCGACTTTGCTTGCTTG 17613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397412796408595