Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1717 143 3e-29 seq1739 91.5 2e-13 seq1587 87.8 2e-12 seq1491 87.8 2e-12 seq2085 86.0 7e-12 >seq1717 Length=72410 Score = 143 bits (158), Expect = 3e-29 Identities = 376/568 (66%), Gaps = 12/568 (2%) Strand=Plus/Minus Query 74730 AGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAAT 74789 ||||||||| | ||| ||||| || ||| ||| ||||| | ||| || | Sbjct 62904 AGGTGAGAGAAGAGCAAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGC 62845 Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| |||||||| || ||||||||||||| ||| ||||||||| | Sbjct 62844 TCGTTGGAGAAAGTAAGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCG 62785 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||||||| ||||||||| || || ||| || ||||| || || || | || || Sbjct 62784 AAGGAACCAGAGAAGAAGATACCCTCCACAGCGGCGAAGGCAACCAGACGCT-CGGCAAA 62726 Query 74910 GGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-G 74964 ||| || | ||| ||||| || | ||||| || || || ||||||| ||| | Sbjct 62725 GGTCGATTGCTTGTCGGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGA-TGCATG 62667 Query 74965 GGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGT 75024 | | ||| |||| || | ||| || | | ||| |||| ||| | | | | Sbjct 62666 GAATAGTCTCGACAGCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTAT 62607 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGA 75084 | || | || ||||| ||||| || || || ||| | | |||| | |||||| Sbjct 62606 CGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGA 62547 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | || ||||| || ||| || || || || ||| | ||| ||||| | | Sbjct 62546 AGCAACGAGCCTCCGCTGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTA 62487 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 |||| |||||||| || || || |||||||| || |||||| || ||||| | || Sbjct 62486 CGATACCGTCCGAAGCAGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGTTGT 62427 Query 75205 CAGTGA----GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 || | | ||| || ||| || | ||| ||| | | || ||||| ||| | ||| Sbjct 62426 CATTCATCCTGTTCGT-CCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTC 62368 Query 75261 CAGAAACTCCCAATCGCCTTTTTGTACA 75288 |||||| | ||||||||||||| Sbjct 62367 CAGAAAGAAGCTTCGGCCTTTTTGTACA 62340 >seq1739 Length=117728 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||| | | || ||||| || || || | ||| ||| ||||| ||| Sbjct 52730 TCATGCGTGTCTCTGTCGGCATCCATGGCGAGGATATCGAGCGCGTCATCGAGACATACA 52671 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | ||||| | | ||||| ||||| || | || || ||||||||||| ||||| Sbjct 52670 ATCTAATGTCCGAGCGCTACTTCACGCATGCTTCACCTACACTGTTCAACGCCGGTACCC 52611 Query 53313 ATCACCCTCAGATGTCGAGC-TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 |||| || | | | | |||||||| ||| ||||| || ||||||||||| ||| Sbjct 52610 CCAACCCCCAACT-TAGTTCGTGCTTCCTCGTGTGCATGAAAGACGACTCGATCGAGGGC 52552 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || |||||| ||||| ||| ||| |||||||||| ||||| Sbjct 52551 ATCTACGATACTCTCAAGAGTTGTGCTATGATCAGTAAGACTGCGGGTGGTATTGGTAT 52493 >seq1587 Length=67671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| ||||| || |||||||| | || ||| | ||||| Sbjct 12011 GTTGGCGAGCTTGGCACCGTAACCGTTACGGCCACCGGTTAGTTTCTTCTCGTTGTCGTC 12070 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCAAAT 119193 ||||||||| | || || || ||||||||||| || |||||||| || Sbjct 12071 GTAGTTGGAAGAAGACAGGAGATGACCAAAGATGAGTTCTGGGATCCACAT 12121 >seq1491 Length=118181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| ||||| || |||||||| | || ||| | ||||| Sbjct 65841 GTTGGCGAGCTTGGCACCGTAACCGTTACGGCCACCGGTGAGTTTCTTCTCGTTGTCGTC 65900 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCAAAT 119193 ||||||||| | ||| ||||| || ||||| || || |||||||| || Sbjct 65901 GTAGTTGGAAGAAGACAAGAGGTGGCCGAAGATAAGTTCTGGGATCCACAT 65951 >seq2085 Length=44481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/240 (68%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||| | | || ||||| || || || | ||| ||| ||||| ||| Sbjct 24161 TCATGCGTGTCTCTGTCGGCATCCATGGCGAGGATATCGAGCGCGTCATCGAGACATACA 24102 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||||||| | | ||||| ||||| || | || || | |||||||| ||||| Sbjct 24101 ACTTAATGTCCGAGCGCTACTTCACGCATGCTTCACCTACATTATTCAACGCCGGTACAC 24042 Query 53313 ATCACCCTCAGAT--GTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 |||| ||| | || | |||||||| ||| ||||| || ||||| ||||| || Sbjct 24041 CAAACCCCCAGCTCAGTTCA--TGCTTCCTCGTGTGTATGAAAGACGACTCAATCGAGGG 23984 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| || |||||| ||||| || ||| |||||||||| ||||| Sbjct 23983 CATCTACGATACCCTCAAGAGTTGTGCTATGATTAGTAAGACTGCGGGTGGTATTGGTAT 23924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547154992256200