Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq557 127 1e-24 seq1796 95.1 8e-15 seq1723 95.1 8e-15 seq2729 93.3 3e-14 >seq557 Length=42797 Score = 127 bits (140), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 |||| || || ||||||||||| || ||||||||||| || ||||| || |||| |||| Sbjct 23692 CCAAGTGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAA 23751 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 | || || ||||| || || | |||||||||||| || || | |||||||||||| || Sbjct 23752 GCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGA 23811 Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || || | ||||| || || ||||| | ||| || |||| ||| || || ||| Sbjct 23812 TC-TTCGCCTTAACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTA 23870 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || |||||||| Sbjct 23871 CCCGTGAGGGTCTTGACGAAGATCTGCAT 23899 >seq1796 Length=58898 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| ||| |||||| || ||||| || || || | || ||| Sbjct 51734 AGACGAAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGC 51793 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | ||| || || || || || | |||||| Sbjct 51794 CCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGGGGAATGCCCTCC 51853 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| ||| || || | ||| Sbjct 51854 TTGTCTTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGT 51912 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||| ||||| |||||||| Sbjct 51913 GATAGTCTTGCCCGTCAGAGTTTTGACAAAGATCTGCAT 51951 >seq1723 Length=56463 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| ||| |||||| || |||||||| || || | || ||| Sbjct 44033 AGACGAAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGC 43974 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| || || || || | |||||| Sbjct 43973 CCGTCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCC 43914 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| || ||| ||||| ||| || || | ||| Sbjct 43913 TTGTCTTGGATC-TTGGCCTTGACGTTATCAATGGTGTCGGACGACTCGACCTCAAGGGT 43855 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 43854 AATAGTCTTGCCCGTCAGAGTCTTGACGAAGATCTGCAT 43816 >seq2729 Length=38494 Score = 93.3 bits (102), Expect = 3e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||| || || || ||||| ||||| || || ||||||| ||||| Sbjct 136 TGAAGAGTGGACTCCTTCTGGATATTGTAATCCGAAAGAGTACGGCCGTCTTCCAGTTGC 77 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCA-CTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | |||||||||||| || || | |||||||||||| ||||||| Sbjct 76 TTGCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGGCCCTCCTTGTCT-TGATCTT 18 Score = 91.5 bits (100), Expect = 9e-14 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 |||| || || || |||||||| || || || || || || || || || |||| |||| Sbjct 369 CCAAGTGAAGGGTACTCTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAA 310 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 | || || || || || || | |||||||||||| || || | || |||||||| || Sbjct 309 GCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGA 250 Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || || | || || || || ||||| | ||| || |||| ||| ||||| ||| Sbjct 249 TC-TTCGCCTTGACATTATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTTA 191 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || |||||||| Sbjct 190 CCCGTGAGAGTCTTGACGAAGATCTGCAT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314695388794127