Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1796 154 1e-32 seq1723 136 3e-27 seq557 87.8 2e-12 >seq1796 Length=58898 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| |||| || ||||| || || ||||| Sbjct 51951 ATGCAGATCTTTGTCAAAACTCTGACGGGCAAGACTATCACCCTTGAGGTTGAGTCGTCC 51892 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || ||||| || |||||||| Sbjct 51891 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGATCAG 51832 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| ||||| || | || ||| | ||| | || || |||||| Sbjct 51831 CAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGGCGTACCTTGTCTGACTACAAC 51772 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | |||||||| | ||| | || ||||| || Sbjct 51771 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTTCGTCTCCGTGGTGGTAT 51722 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||||||| | || ||||| ||||||||| | ||| Sbjct 51723 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAATCATCC 51664 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| ||||| || || || || || || || |||||| Sbjct 51663 GACACCATCGATAACGTTAAGGCAAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAA 51604 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| || ||| | ||||| || || |||| ||||||||| Sbjct 51603 CAACGTCTGATCTTTGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAAC 51544 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || ||||| |||| |||||||| Sbjct 51543 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTGCGTCTGCGTGGTGGCAT 51494 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| ||||| || || || ||| ||||||| | || || || | || Sbjct 51496 CATGCAAATATTTGTCAAAACCCTCACGGGTAAGACTATTACGTTGGAGGTCGAGTCATC 51437 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || || || || || || || || ||||| || Sbjct 51436 AGACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCA 51377 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || || | || ||| || || | || || ||||| Sbjct 51376 GCAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAA 51317 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGG 27195 |||||| ||||| ||||| | ||| ||| Sbjct 51316 CATTCAGAAGGAATCGACTCTTCATCTGG 51288 >seq1723 Length=56463 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||||||| | || || || ||||||||| | ||| Sbjct 44044 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTGGAATCATCC 44103 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || |||||| || || || || || || || || |||||| Sbjct 44104 GACACCATCGATAACGTTAAGGCAAAAATCCAGGATAAGGAGGGTATCCCCCCTGATCAA 44163 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || ||| | ||||| || || |||| ||||||||| Sbjct 44164 CAACGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAAC 44223 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || | ||| ||||| |||| ||||| || Sbjct 44224 ATCCAGAAGGAATCCACCCTTCACCTCGTTCTGCGTCTGCGTGGTGGTAT 44273 >seq557 Length=42797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | || || || || || || | ||| Sbjct 24129 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCC 24070 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG-GCATACCAC---CCGA 27103 ||| |||| || | || || | | ||||||||| || | | | || | |||| Sbjct 24069 GACACGATCGACAACGTGAAGGCCAGA--TCAAGACAAGGAGGCGNNTCCCCCGTCCCGA 24012 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || ||| | || | |||||||| || | |||||| || || |||| ||||| Sbjct 24011 CCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCGGATTA 23952 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||| || | || | || | ||| | || ||||| || Sbjct 23951 CAACATCCAGAAGGAGTCCACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTAT 23898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434869912034880