Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq953 161 3e-35 >seq953 Length=1916 Score = 161 bits (178), Expect = 3e-35 Identities = 395/594 (66%), Gaps = 10/594 (2%) Strand=Plus/Minus Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 39437 || |||||||||| || ||||||| | ||||| | || |||| | || || Sbjct 1114 TGTAGTGGTCAACTAATTTTGGCCACAGTTTTAGAATCTTGA----TATCTAACCTCAGA 1059 Query 39438 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 39497 ||| || || | ||| ||| ||||||| | || ||||| | |||||||||| Sbjct 1058 TTCATTCGGCGCTAAACCAGCATTATAATGATGTGGTCTAACATTATTGTAATATCCGTT 999 Query 39498 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 39557 ||||| || | | | || || || ||| || |||| || |||| Sbjct 998 TATATAATCACTCACACTATATTTAGCGTCTCTAAAGTTTTCATATCCAACTTTTGGCAT 939 Query 39558 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 39617 |||||| |||| | || || || || || |||||||| |||||||| |||||||| Sbjct 938 CCATTCCGTCTTAAAGCTTCTAAAAAATCGTTCCATTGGCGCATTATCCCAACAGTTTCC 879 Query 39618 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC--TGCCGGAACTGCCTG 39675 |||| ||||||||| || |||| || | ||| | ||| || || | | | Sbjct 878 GCGCCTACTCATACTTTGTTTGATTTTATAGCGCCATA--AACGTTGGCGATATTTCAAA 821 Query 39676 CTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCC-GACGGGCTTACCACGGGT 39734 || ||||||||||| || || || || ||||||| || ||||| || || | | | Sbjct 820 CTTGTATAATGACTACCNTGGTCTGAATGAAACATCAGTCCTGACGGTTTT-CCTCTGCT 762 Query 39735 TTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGC 39794 ||| | || | ||| || ||||| | || | | | || || || || ||||| || Sbjct 761 TTCATACGCGAGTTCAAGCGCTTTTAATGTTAAATTAGTATCTGGTGACAATGACATCGC 702 Query 39795 CCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTT 39854 ||| || ||| ||| | ||| || | || | ||| ||||| | || ||||| || || Sbjct 701 CCAACCAACTACTTTGCGTGCAAATAAATCAATAACGACGGCTAAATAGGCCCAACGATT 642 Query 39855 ACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAA 39914 || ||||| ||||| ||||||||||||||||| || || |||||| || | || Sbjct 641 GCCTGTCCAAATATACGTCACATCACCGCACCATACGGTATCTGGCTCAACAACATCAAA 582 Query 39915 CTGCCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATA 39968 ||| | || || ||| ||||| ||| ||| |||| |||||| | |||||| Sbjct 581 CTGTCTATCGAGCAGGTTTGGGATTTCAAGATGCTCATTACCACCCCTTTTATA 528 Score = 161 bits (178), Expect = 3e-35 Identities = 395/594 (66%), Gaps = 10/594 (2%) Strand=Plus/Minus Query 16753 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 16812 || |||||||||| || ||||||| | ||||| | || |||| | || || Sbjct 1114 TGTAGTGGTCAACTAATTTTGGCCACAGTTTTAGAATCTTGA----TATCTAACCTCAGA 1059 Query 16813 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 16872 ||| || || | ||| ||| ||||||| | || ||||| | |||||||||| Sbjct 1058 TTCATTCGGCGCTAAACCAGCATTATAATGATGTGGTCTAACATTATTGTAATATCCGTT 999 Query 16873 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 16932 ||||| || | | | || || || ||| || |||| || |||| Sbjct 998 TATATAATCACTCACACTATATTTAGCGTCTCTAAAGTTTTCATATCCAACTTTTGGCAT 939 Query 16933 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 16992 |||||| |||| | || || || || || |||||||| |||||||| |||||||| Sbjct 938 CCATTCCGTCTTAAAGCTTCTAAAAAATCGTTCCATTGGCGCATTATCCCAACAGTTTCC 879 Query 16993 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC--TGCCGGAACTGCCTG 17050 |||| ||||||||| || |||| || | ||| | ||| || || | | | Sbjct 878 GCGCCTACTCATACTTTGTTTGATTTTATAGCGCCATA--AACGTTGGCGATATTTCAAA 821 Query 17051 CTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCC-GACGGGCTTACCACGGGT 17109 || ||||||||||| || || || || ||||||| || ||||| || || | | | Sbjct 820 CTTGTATAATGACTACCNTGGTCTGAATGAAACATCAGTCCTGACGGTTTT-CCTCTGCT 762 Query 17110 TTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGC 17169 ||| | || | ||| || ||||| | || | | | || || || || ||||| || Sbjct 761 TTCATACGCGAGTTCAAGCGCTTTTAATGTTAAATTAGTATCTGGTGACAATGACATCGC 702 Query 17170 CCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTT 17229 ||| || ||| ||| | ||| || | || | ||| ||||| | || ||||| || || Sbjct 701 CCAACCAACTACTTTGCGTGCAAATAAATCAATAACGACGGCTAAATAGGCCCAACGATT 642 Query 17230 ACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAA 17289 || ||||| ||||| ||||||||||||||||| || || |||||| || | || Sbjct 641 GCCTGTCCAAATATACGTCACATCACCGCACCATACGGTATCTGGCTCAACAACATCAAA 582 Query 17290 CTGCCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATA 17343 ||| | || || ||| ||||| ||| ||| |||| |||||| | |||||| Sbjct 581 CTGTCTATCGAGCAGGTTTGGGATTTCAAGATGCTCATTACCACCCCTTTTATA 528 Score = 143 bits (158), Expect = 7e-30 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40252 ATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTT 40311 |||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 238 ATTAACGAGAATTGTTCAGGGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTAATATAT 179 Query 40312 CATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 40371 | ||||| | |||||| ||||| | | || | |||||||| |||||||||||||| | Sbjct 178 CCTTTTCTAATTCAATGCGTTGGATTTGNTTTTTAAGCTCACGAATTTCAATTTGTTCGG 119 Query 40372 GGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTAATTGTTTCACCC 40431 | || || || || || | || || | ||| | ||| || | |||||| | |||| Sbjct 118 GTGTCATTGGTGATGCAGTGGGAGTCTGGCCATTCCGTTCTTGCTTTAATTGAGTTACCC 59 Query 40432 A 40432 | Sbjct 58 A 58 Score = 143 bits (158), Expect = 7e-30 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 17627 ATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTT 17686 |||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 238 ATTAACGAGAATTGTTCAGGGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTAATATAT 179 Query 17687 CATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 17746 | ||||| | |||||| ||||| | | || | |||||||| |||||||||||||| | Sbjct 178 CCTTTTCTAATTCAATGCGTTGGATTTGNTTTTTAAGCTCACGAATTTCAATTTGTTCGG 119 Query 17747 GGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTAATTGTTTCACCC 17806 | || || || || || | || || | ||| | ||| || | |||||| | |||| Sbjct 118 GTGTCATTGGTGATGCAGTGGGAGTCTGGCCATTCCGTTCTTGCTTTAATTGAGTTACCC 59 Query 17807 A 17807 | Sbjct 58 A 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132146002521400