Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1796 120 2e-22 seq1723 107 1e-18 seq557 98.7 7e-16 >seq1796 Length=58898 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || ||||||||||||||||| || || | Sbjct 51723 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAATCATCC 51664 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| |||| | || || || || ||| | || || ||||| Sbjct 51663 GACACCATCGATAACGTTAAGGCAAAGA-TTCAGGATAAGGAGGGTATCCCCCCTGATCA 51605 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| || ||||| ||||| | |||||| | |||||||| Sbjct 51604 ACAACGTCTGATCTTTGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAA 51545 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 51544 CATCCAGAAGGAGTCCAC 51527 >seq1723 Length=56463 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || |||||||| |||||||| || || | Sbjct 44044 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTGGAATCATCC 44103 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| |||||| | || || || ||| | || || ||||| Sbjct 44104 GACACCATCGATAACGTTAAGGCAAAAA-TCCAGGATAAGGAGGGTATCCCCCCTGATCA 44162 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || ||||| || ||||| ||||| | |||||| | |||||||| Sbjct 44163 ACAACGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGTCGCACTCTTTCGGATTACAA 44222 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 44223 CATCCAGAAGGAATCCAC 44240 >seq557 Length=42797 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || || || || || || ||| | Sbjct 23899 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCC 23840 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || || ||||| || ||| | || || || || Sbjct 23839 GACACGATCGATAATGTTAAGGC-GAAGATCCAAGACAAGGAGGGTATTCCCCCCGACCA 23781 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||| || || || |||| ||||| | |||||| || Sbjct 23780 ACAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACACTCTCCGATTATAA 23721 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 23720 CATCCAGAAGGAG 23708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337972858250852