Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2640 150 2e-31 seq1717 122 7e-23 >seq2640 Length=24278 Score = 150 bits (166), Expect = 2e-31 Identities = 369/555 (66%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || ||||| || |||| ||||| || | ||| || |||||||| || || || Sbjct 17612 AAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTA 17553 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | |||||||| | ||| | |||||| | ||| || ||||| || || || ||||| ||| Sbjct 17552 AGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAG 17493 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCG--AACGAGCTGGCT--TT 4720 || || || || || ||||| || || |||| || | || || | | || || || Sbjct 17492 AAGATACCCTCCACAGCGGCGAAGGCAACTAGACG---CTCGGCAAAG-GTTGACTGCTT 17437 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 ||| |||||| || | |||||| | || || ||| | ||| ||||| || | | Sbjct 17436 GTCGGAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGAC 17377 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| | || | | | || ||||| |||| || || || || ||||| Sbjct 17376 AGCATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGA 17317 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 || | || || || || || || || ||||| || ||||| ||||| | ||| || Sbjct 17316 GTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTC 17257 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | | ||||||||||||| | || | || || | ||| || ||||| |||||||| Sbjct 17256 CGCTGCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGTCCGA 17197 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTT 5017 || || || || |||| || ||||| ||||||| |||| |||| | | || Sbjct 17196 AGCAGCGAAGAAAGCCAGGACGTGAGAGATAAAGTGACGTTCGTTGTCATTCATCTTGTT 17137 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 |||||| | ||| || |||| | || | || ||| ||||||| || || ||||| Sbjct 17136 CGTCCAGTCGTGCAGGTCCTTAGAGAGGTCCATCTCCTCAGCAGTCCAGAAAGAAGCTTC 17077 Query 5078 CGCTTTTTTGTACAT 5092 || || || ||||| Sbjct 17076 GGCCTTCTTATACAT 17062 >seq1717 Length=72410 Score = 122 bits (134), Expect = 7e-23 Identities = 360/552 (65%), Gaps = 5/552 (1%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || ||||| || |||| || || || | ||| || || ||||| || || || Sbjct 62889 AAGCAAGCAAAGTCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTA 62830 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | || ||||| | || | ||| || | ||| || || || || || || ||||| ||| Sbjct 62829 AGACCAGGCATGAGGCCACGCTTCTTCATCCAGAAGATGGCAGCGAAGGAACCAGAGAAG 62770 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTC 4723 || || || || || ||||| || || || | || | || | | | |||| ||| Sbjct 62769 AAGATACCCTCCACAGCGGCGAAGGCAACCAGACGCTCGGCAAAGGTCGATTGCTT-GTC 62711 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 |||||| || | |||||| | || || || | ||| ||||| || | | ||| Sbjct 62710 GGAAATCCACTTCAGTGCCCAATCCGCCTTACGTTTGATGCATGGAATAGTCTCGACAGC 62651 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | || | | | || ||||| |||| || || || || ||||| || Sbjct 62650 ATCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGTA 62591 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 | || || || || || || || ||||| || ||||| ||||| | ||| || | Sbjct 62590 TGTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGC 62531 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | | ||||||||||| | || | ||||| | ||| || ||||| |||||||| || Sbjct 62530 TGCCTGAACTTCGTTGGAGAAACGCTCTACGAGGTTCTCATTTACGATACCGTCCGAAGC 62471 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTT 5020 ||||| || |||| ||| || || ||||| | || | |||| | | || | Sbjct 62470 AGCAAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCGTTGTCATTCATCCTGTTCGT 62411 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||||| | ||| ||| |||| | || | ||||| ||||||| || || ||||| || Sbjct 62410 CCAGTCGTGCAGATCCTTAGAGAGGTCCATCTCTTCGGCAGTCCAGAAAGAAGCTTCGGC 62351 Query 5081 TTTTTTGTACAT 5092 ||||||||||| Sbjct 62350 CTTTTTGTACAT 62339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427003179575027