Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2640 95.1 2e-14 >seq2640 Length=24278 Score = 95.1 bits (104), Expect = 2e-14 Identities = 348/539 (65%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 |||||||| | || || | |||||| || || || ||||||||||| || ||||| ||| Sbjct 17588 CCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTAAGACCGGGCATAAGACCACGCTTT 17529 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || | ||| || || || ||||| || ||||| ||||| || || || || || || || Sbjct 17528 TTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 17469 Query 48282 GCGGTAAGTCTCTCTCC-----GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAAT 48336 || || | ||| | | ||| |||| || | |||||| ||||||||| Sbjct 17468 GCAACTAGACGCTCGGCAAAGGTTGACT-GCTT-GTCGGAAATCCACTTCAGTGCCCAAT 17411 Query 48337 CAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCAT 48396 | ||||| ||| | || || || || || | ||||| || || | | || Sbjct 17410 CGGCCTTACGCTTGATGCATGGAATAGTCTCGACAGCATCGAACAGTCGGGTACGCTCGG 17351 Query 48397 TGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAA 48456 | || || ||| ||||| || | || || | || ||||| || || || | Sbjct 17350 CGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGTATGTCTCTGAGTGGATGTTCTCCA 17291 Query 48457 TTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TGATCTGTACCTCCGTACAAAAT 48515 | ||||| || ||||| || || | || || | || | || || || | | || Sbjct 17290 TCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCTGCT-TGAACTTCGTTGGAGAAA 17232 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 || ||| | | ||||||||||| || || || |||||| || || || | || || Sbjct 17231 CGCTCAACGAGGTTCTCATTTACGATACCGTCCGAAGCAGCGAAGAAAGCCAGGACGTGA 17172 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT---TCCAGTCATTGATATCTTTTGAT 48632 ||||| | ||||||| | ||| || | ||||||| | | || || || Sbjct 17171 GAGATAAAGTGACGTTCGTTGTCATTCATCTTGTTCGTCCAGTCGTGCAGGTCCTTAGAG 17112 Query 48633 ATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | || | || ||||| ||||| || || || || || || |||||||| | ||| || Sbjct 17111 AGGTCCATCTCCTCAGCAGTCCAGAAAGAAGCTTCGGCCTTCTTATACATTTGCCAGAT 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694591353112160