Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2640 105 1e-17 >seq2640 Length=24278 Score = 105 bits (116), Expect = 1e-17 Identities = 360/560 (64%), Gaps = 6/560 (1%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || ||||| || || | ||||||||| | || || | |||||| || || || Sbjct 17612 AAGCAAGCAAAGTCGGTGTGCATGCCTTCATCACGGCTGATAAGTTCGTTGGAGAAGGTA 17553 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || || ||||| || ||||||||||| | ||| || ||||| ||||| || ||||| ||| Sbjct 17552 AGACCGGGCATAAGACCACGCTTTTTCATCCAGAAGATAGCAGCGAAGGAGCCAGAGAAG 17493 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT-- 46804 || || || || ||||| ||||| || || || | ||| | | | | | || | Sbjct 17492 AAGATACCCTCCACAGCGGCGAAGGCAACTAGACGCTCGGCAAAGGTTGACTGCTTGTCG 17433 Query 46805 -GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 ||||||| | | |||||||| ||||| ||| | || || || || || | |||| Sbjct 17432 GAAATCCACTTCAGTGCCCAATCGGCCTTACGCTTGATGCATGGAATAGTCTCGACAGCA 17373 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 | || || | | || | || || |||||||| || | || || Sbjct 17372 TCGAACAGTCGGGTACGCTCGGCGGGGTCCCGAATGTATGTATCGATGAGTAGCGAGTAT 17313 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 | ||||| || ||||| || || ||||| || ||||| || || | || || | Sbjct 17312 GTCTCTGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCCGCT 17253 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 || || || | | || || ||| | |||||||| || || || || |||| Sbjct 17252 GCTTGAACTTCGTTGGAGAAACGCTCAACGAGGTTCTCATTTACGATACCGTCCGAAGCA 17193 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT---TC 47100 || || || |||| || || ||||| | ||| | | | ||| || | || Sbjct 17192 GCGAAGAAAGCCAGGACGTGAGAGATAAAGTGACGTTCGTTGTCATTCATCTTGTTCGTC 17133 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 ||||| | | || || || | || | || ||||| |||||||| || || || || Sbjct 17132 CAGTCGTGCAGGTCCTTAGAGAGGTCCATCTCCTCAGCAGTCCAGAAAGAAGCTTCGGCC 17073 Query 47161 TTTTTATACATATTCCATAT 47180 || |||||||| | ||| || Sbjct 17072 TTCTTATACATTTGCCAGAT 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712854916726080