Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1796 114 3e-20 seq1723 105 2e-17 seq557 95.1 3e-14 seq2729 91.5 3e-13 >seq1796 Length=58898 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||||| || |||||||||||||| | | ||| | |||||| Sbjct 51512 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCT 51571 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| || | || || || | | ||| || ||||| | Sbjct 51572 TCGAGTTGCTTT--CCGGCAAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTAT 51629 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| ||| || || | || | | |||| || || ||||| ||||| || | Sbjct 51630 CCTGAATCTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCACTTCGAGAGTGATCG 51689 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| |||||||| |||| ||||| Sbjct 51690 TCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 51723 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || ||||| || ||||||||||| || | || || | ||| || Sbjct 51740 AGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGCCCGTCC 51799 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||| || | | || || ||||| ||| Sbjct 51800 TCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGGGGAATGCCCTCCTTGTCT 51859 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| || ||| || ||||| || ||||| Sbjct 51860 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGTGATAGTC 51919 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| ||||| || || |||| |||||| Sbjct 51920 TTGCCCGTCAGAGTTTTGACAAAGATCTGCAT 51951 >seq1723 Length=56463 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || || || || |||||||||||||| | | ||| | |||||| Sbjct 44255 AGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCT 44196 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | || || || | | ||| || ||||| | Sbjct 44195 TCGAGTTGCTTT--CCGGCGAAGATCAGACGTTGTTGATCAGGGGGGATACCCTCCTTAT 44138 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || |||||| || || | || | | |||| || || ||||| || || || | Sbjct 44137 CCTGGATTTTTGCCTTAACGTTATCGATGGTGTCGGATGATTCCACTTCGAGGGTGATCG 44078 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| |||||||| |||| ||||| Sbjct 44077 TCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 44044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG- 151957 ||||||||||| ||||| || || |||||||| || | | || | ||||| || || Sbjct 44477 AGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTACGACCATCCTCAAGC 44418 Query 151958 -GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| |||||||| || || | ||||||||| | | || || ||||| || || | Sbjct 44417 TGCTTT--CCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGA 44360 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | ||||||| ||| || || | || || || || | Sbjct 44359 TCTTGGCCTTCACGTTGTCGATCGTGTCTGATGACTCGACCTCCAACGTGATGGTCTTAC 44300 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| ||||| | ||||| Sbjct 44299 CCGTGAGGGTCTTGACGAATATTTGCAT 44272 >seq557 Length=42797 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| |||||||| ||||| || |||||||||||||| | | ||| | || ||| Sbjct 23916 AGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCGTCT 23975 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCG---CCGAGATTC-CTTCCTT 152008 || || || ||||| ||||| || | |||||||| | | || | | ||||| Sbjct 23976 TCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGACGGGGGANNCGCCTCCTT 24035 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||| | | || || | || | |||| || ||| || || || || || Sbjct 24036 GTCTTGA--TCTGGCCTTCACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGCGTGAT 24093 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||||||| || |||| |||||| Sbjct 24094 GGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 24129 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||| || |||||||| ||||||| | || | || || || | Sbjct 23693 CAAG-TGAAGGGTGCTCTCCTTCTGGATGTTATAATCGGAGAGTGTGCGACCGTCCTCAA 23751 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | ||| ||||| | | || || ||||| ||||| | Sbjct 23752 GCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCTTGGA 23811 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | |||| || ||| || || || ||||| || || | Sbjct 23812 TCTTCGCCTTAACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTAC 23871 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| ||||||| |||||| Sbjct 23872 CCGTGAGGGTCTTGACGAAGATCTGCAT 23899 >seq2729 Length=38494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||| ||| || ||||| ||||| || | | || | || || || | Sbjct 368 CAAG-TGAAGGGTACTCTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGACCGTCCTCAA 310 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| || | ||| ||||| | | || |||||||| || || Sbjct 309 GCTGCTTT--CCAGCGAAGATGAGACGCTGTTGGTCGGGGGGAATACCTTCCTTGTCCTG 252 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | |||| || ||| || || || || || || || Sbjct 251 GATCTTCGCCTTGACATTATCGATCGTGTCAGAGGACTCGACCTCCAGGGTGATCGTCTT 192 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||| ||||||| |||||| Sbjct 191 ACCCGTGAGAGTCTTGACGAAGATCTGCAT 162 Score = 84.2 bits (92), Expect = 5e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| |||||||| ||||| || ||||| |||||||| | | ||| | Sbjct 152 GAGACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGAAAGAGTACG 93 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGAT-TCCTT 152004 || ||||| || || ||||||||||| || | ||| ||||| | | ||| || | Sbjct 92 GCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGGCCCT 33 Query 152005 CCTTTTCTTGA 152015 |||| |||||| Sbjct 32 CCTTGTCTTGA 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153688947488649