Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq124 114 3e-20 seq346 104 5e-17 seq101 104 5e-17 >seq124 Length=448922 Score = 114 bits (126), Expect = 3e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| |||||||| || | | ||| |||||||| | ||||| | || ||| | Sbjct 289183 ATCATCACAGAAGCTGTGAAGATCGAGCAGGAGTTCCTCACGGACGCGCTCCCC-GTCTC 289241 Query 230446 CTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 | | || ||||||||| | | || ||| ||||||||||| ||||| || |||||| | Sbjct 289242 CCTCATCGGCATGAACTCGAAGCTGATGAACCAGTACATCGAGTTCGTCGCGGACCGCCT 289301 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || ||||| || ||||||| |||||||| ||| ||||| | || ||||| Sbjct 289302 CCTCGTCGCACTCGGCAACGAGAAGCACTACAACTCGTCGAATCCCTTCGACTTCATGGA 289361 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||||| || || ||||| ||||||||||| ||||| || Sbjct 289362 CATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGCGCGT 289406 >seq346 Length=295572 Score = 104 bits (114), Expect = 5e-17 Identities = 191/276 (69%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 281808 GGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTC 281867 ||||| | | ||| | |||||| || || ||| ||||||| |||| ||||||||| ||| Sbjct 69281 GGCAAGAGCAGGTTGACGTTATTACTTCCTACGAAATCCTGGGCCAAGTTGACGATGGTC 69340 Query 281868 ---CCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTG 281924 ||| |||| | | || |||||||||||||| |||||||| | ||||||| | Sbjct 69341 ATGCCC--AAGCT-TGCTTCGCCGTGGTGATAGGCAGCGTGTTCGGAGATATAACCAACG 69397 Query 281925 AACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAA---TATAATACT 281981 | ||| || ||||| | ||| | | ||||| ||||| |||| ||| || Sbjct 69398 AGCTGGGCGACCTTGATCTCTCCCTTGAGCTTGCGCTTGAA---GCAAGACCATATGACC 69454 Query 281982 TTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCATAC 282041 || |||||| ||||| | || || ||| | ||||||||| || | ||| Sbjct 69455 TTGCGTTGACCGGGCTTCAGCCCGTCGACGGCGGACGGAATGGATCGAACATTGTCGGCT 69514 Query 282042 CGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCG 282077 | |||||||| || || ||||||| ||||||||| Sbjct 69515 TGGGAGAACAAGATTAGCTCCTTGTTGATGAAGTCG 69550 >seq101 Length=461416 Score = 104 bits (114), Expect = 5e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || || | | ||| |||||||| | ||||| | || ||| | Sbjct 404001 ATCATCACGGAGGCCGTGAAGATCGAGCAGGAGTTCCTCACCGACGCGCTCCCC-GTCTC 404059 Query 230446 -CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 || || ||||||||| | || | ||| ||||| ||||| ||||| ||||||||| | Sbjct 404060 GCTCATCGGCATGAACTCGAAATTGATGAACCAGTATATCGAGTTCGTCGCCGACCGCCT 404119 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || || || || ||||||| |||||||| ||| ||||| | || ||||| Sbjct 404120 GCTCGTCGCGCTCGGCAACGAGAAGCACTACAACTCGTCGAATCCCTTCGACTTCATGGA 404179 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 | || ||||| || || ||||| ||||||||||| ||||| ||| ||||| Sbjct 404180 CATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGCGCGTCTCCGACTA 404233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816762500420