Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq57 125 5e-24 seq524 122 6e-23 seq379 84.2 1e-11 >seq57 Length=599116 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 468191 CCGCCACGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAG 468250 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| || |||||||| || ||||||||| || Sbjct 468251 AGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCAAAAATGAGGCGTTGCTGGTCGGGCGGG 468310 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 468311 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACC 468370 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| ||||| ||||| || || |||||||||||||| Sbjct 468371 TCCAACGTGATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 468417 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| | ||| || || || | || || ||||| |||||||| || || Sbjct 467450 CCGCCACGCAAGCGCAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCCGAA 467509 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||||||||||||| ||||| ||||| |||||||||||| || Sbjct 467510 AGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 467569 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | |||| |||| ||| || || Sbjct 467570 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTATCAATCGTGTCGGACGACTCAACT 467629 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| || || || || || ||||||||||| Sbjct 467630 TCCAACGTGATCGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 467676 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | || || || || | || || ||||| |||||||| || || Sbjct 467678 CCGCCGCGCAGACGAAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGAA 467737 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| || Sbjct 467738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGTGGA 467797 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||| || ||||| | | | | |||| |||| ||| ||||| Sbjct 467798 ATGCCCTCCTTGTCCTGGATC-TTCGCTTTGACGTTGTCGATCGTGTCGGACGACTCGAC 467856 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||||||||| || || || || || ||||| Sbjct 467857 CTCCAGCGTGATCGTCTTGCCGGTGAGTGTCTTAACGAATATTTGCAT 467904 Score = 102 bits (112), Expect = 5e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34180 CACCA-GGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 ||||| |||| | ||| || ||||| ||||| ||||| || || || |||| | Sbjct 467979 CACCAAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTT 468038 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCG 34297 | | ||||||||| ||||||||||| ||||||||||| | |||| | || |||||||| Sbjct 468039 CGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGCGGG-ATGCCTTCCTTGTCC 468097 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || |||| ||||||||| Sbjct 468098 TGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTC 468157 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||| ||||| Sbjct 468158 TTGCCCGTCAGTGTCTTGACGAAGATTTGCAT 468189 >seq524 Length=649165 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34193 GTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCT 34252 || || || ||||| |||||||| || || ||| ||| | || || | ||||||||| Sbjct 613511 GTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCA 613570 Query 34253 GCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT 34312 || || || || |||||||||||| || | || ||||||||| ||||| ||| Sbjct 613571 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 613630 Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372 | || | || | ||| | || ||||| || | ||||||||| ||||||||||| || Sbjct 613631 ACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTC 613690 Query 34373 TTCACAAAGATCTGCATCGC 34392 || |||||||||||||| || Sbjct 613691 TTGACAAAGATCTGCATTGC 613710 Score = 107 bits (118), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || || ||||| |||||||||||||| || || |||| || | | Sbjct 613217 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGC 613276 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| ||||| || || |||||||||||| || | || ||||||||| ||| Sbjct 613277 TGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 613336 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGAT----TCGACGTCCACCGTGATGGTTTT 34359 || ||| | || |||||| ||| | ||||| |||| ||||| || || Sbjct 613337 TTGGCCTTGACAT----TATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTT 613392 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || || ||||| ||||||||||| Sbjct 613393 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 613422 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || ||||| | || || ||||| || ||||| |||||| Sbjct 612917 CCACCACGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGAC 612976 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | |||||||| |||||||| | |||||||||||| || Sbjct 612977 AGCGTCCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGGG 613036 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || || || ||| | | | | |||| || | || ||||| Sbjct 613037 ATCCCCTCCTTATCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGACT 613096 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| | || || |||||||||||||| Sbjct 613097 TCCAGGGTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCAT 613143 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34193 GTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCT 34252 || || || ||||| || ||||||||||| ||| || |||| || | |||||||| Sbjct 612719 GTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTCGAGTTGCTTGCCG 612778 Query 34253 GCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT 34312 |||||||| || |||||||||||| || | | |||||||| || || ||| Sbjct 612779 GCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATTTTCGCCTTG 612838 Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372 | | | | |||| ||||| || ||||| || | |||||| || ||||| || || || Sbjct 612839 ACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTTGCCAGTAAGCGTC 612898 Query 34373 TTCACAAAGATCTGCAT 34389 || || || || ||||| Sbjct 612899 TTGACGAAAATTTGCAT 612915 >seq379 Length=286460 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| | || || ||||| ||||||||||| ||| Sbjct 273243 CCGCCACGCAGACGGAGGACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 273184 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| |||| |||| ||||||||| || || || || |||||||||||| Sbjct 273183 AGCGTCCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCG 273130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069897407040