Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq524 154 1e-32 seq57 111 1e-19 >seq524 Length=649165 Score = 154 bits (170), Expect = 1e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||||||||||||||||||||||||||| || |||| |||| || || || Sbjct 613219 GTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCTAGCTG 613278 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| |||||||| || | |||||||||||| || || Sbjct 613279 CTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 613338 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | | ||| ||||||| ||| |||||||||||||| Sbjct 613339 GGCCTTGACATTATCGATAGTGTCACTGCTCTCGACCTCCAGGGTGATCGTCTTGCCCGT 613398 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||| ||||| |||||| Sbjct 613399 CAGCGTCTTCACGAAGATCTGCATG 613423 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| |||||||||||||||||||| || ||||||||| || ||| |||| | Sbjct 612705 TACCAAGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCT 612764 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | ||||| || |||||||| || | ||||| |||||||| || | || ||||||||| Sbjct 612765 CGAGTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCT 612824 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||||| ||| || | | | || ||| ||||| | || || |||| Sbjct 612825 GGATTTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCT 612884 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || ||||| || || ||||||||| Sbjct 612885 TGCCAGTAAGCGTCTTGACGAAAATTTGCATG 612916 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || ||||||||||||||||| |||||||| || || ||| | || || || || Sbjct 613505 TGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTGC 613564 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| ||||| |||||||| || | |||||||||||| || || Sbjct 613565 TTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 613624 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||| ||||| | || || |||||||| || Sbjct 613625 GCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTG 613684 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 613685 AGGGTCTTGACAAAGATCTGCAT 613707 >seq57 Length=599116 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || ||||||||| ||||| ||||| || |||| |||| || Sbjct 467980 ACCAAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGAGTGCGACCGTCTTC 468039 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || |||||||| || | ||||| ||||| || || | || ||||||||| Sbjct 468040 GAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTG 468099 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | ||||| | ||||||||||| || || ||||| Sbjct 468100 GATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGCGTGATGGTCTT 468159 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| ||||| || |||||||||||| Sbjct 468160 GCCCGTCAGTGTCTTGACGAAGATTTGCATG 468190 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || |||| |||| || || || || ||||| || Sbjct 468226 CTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCAAA 468285 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || |||||||| || | |||||||||||| || || ||| || Sbjct 468286 AATGAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 468345 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||||||||||| || || |||||||| || || ||||| || Sbjct 468346 GTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTGCCAGTGAGTGTCTTGAC 468405 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 468406 AAAGATCTGCATG 468418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072628801214