Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq524 96.9 3e-15 >seq524 Length=649165 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 42901 ACCAA-ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| ||| | ||||||||||| || | |||||| ||||| | || || |||| || Sbjct 612706 ACCAAGATGCAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGCCCGTCCTC 612765 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||| |||||||| ||||| | ||||| || |||| ||| | ||||| || || Sbjct 612766 GAGTTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGCGGGATTCCTTCCTTGTCCTG 612825 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | | ||||| || | | || ||| | |||||| || | ||| || || || Sbjct 612826 GATTTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCGACCTCGAGCGTGATTGTCTT 612885 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || || ||||||||||| Sbjct 612886 GCCAGTAAGCGTCTTGACGAAAATTTGCAT 612915 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | || | || | ||| |||||| || | |||||||||||| Sbjct 612916 GCCACCACGCAGGCGCAGAACAAGGTGCAGCGTGGACTCCTTCTGGATATTGTAATCGGA 612975 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| || | ||| |||||||| |||||||| ||||| || |||| ||| Sbjct 612976 CAGCGTCCGACCGTCCTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCGGGCGG 613035 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| | | ||||| || ||| ||||| | |||||| Sbjct 613036 GATCCCCTCCTTATCCTGGATTTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 613095 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | || || ||||| || ||||| Sbjct 613096 TTCCAGGGTGATGGTCTTCCCGGTCAACGTCTTGACAAAGATCTGCAT 613143 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||||||||||| || | |||||||| || | || || | || || | || Sbjct 613504 ATGGAGCGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGCTG 613563 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||||| ||||| |||| ||||| || |||| ||| | || || || || |||| Sbjct 613564 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 613623 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| | | | ||||||| | |||||| || | ||| || || || ||||| Sbjct 613624 GGCCTTGACATTATCGATGGTGTCGCTGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 613683 Query 43086 TAGAGTTTTCACAAAAATTTGCATT 43110 || || || ||||| || |||||| Sbjct 613684 GAGGGTCTTGACAAAGATCTGCATT 613708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367117998972