Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auricularia_20auricula-judae_20[genbank_20GCA_5F002092955.1_202017- 04-17] 534 sequences; 43,569,032 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq124 136 6e-27 seq101 114 2e-20 seq379 102 1e-16 seq112 84.2 3e-11 >seq124 Length=448922 Score = 136 bits (150), Expect = 6e-27 Identities = 289/427 (68%), Gaps = 17/427 (4%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||||||||| || ||||| ||||| || || ||| |||||| |||||| Sbjct 288988 GCCTTCGCCGCCGTTGAAGGCATTTTCTTCAGCGGCTCCTTCGCGAGCATCTTCTGGCTC 289047 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || ||||||||||| |||||| | |||||| | || || || |||||| Sbjct 289048 AAGAAGCGAGGCCTCATGCCCGGCCTGACGTTCTCCAACGAGCTCATCTCGCGCGACGAG 289107 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAG 125611 ||| | ||| |||||||| || || || ||||| || | | | | || Sbjct 289108 GGCATGCACACCGACTTTGCGTGCCTGCTCTTCTCGCACCT-----CCGCAAGCGCCCAC 289162 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 |||| || | ||| || || | || || || |||| ||| || || ||||| Sbjct 289163 ATCC-----CGACACCGTCCGCATGATCATCACAGAAGCTGTGAAGATCGAGCAGGAGTT 289217 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 || || || | || || ||| | | || |||||||||| ||||| ||| | |||| Sbjct 289218 CCTCACGGACGCGCTCCCCGTCTCCCTCATCGGCATGAACTCGAAGCTGATGAACCAGTA 289277 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAA 125788 ||| ||||| || || || || || || || | ||| || ||| ||||| Sbjct 289278 CATCGAGTTCGTCGCGGACCGCCTCCT---CGTCGCACTCGGCAACGAGAAGCACTACAA 289334 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 | | ||||||||| || |||||| || || || || |||| ||||| ||||| || Sbjct 289335 CTCGTCGAATCCCTTCGACTTCATGGACATGATCTCGCTGCAGGGCAAGACGAACTTCTT 289394 Query 125849 CGAGAAG 125855 ||||||| Sbjct 289395 CGAGAAG 289401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||| || || ||||||| ||| ||| | || || ||||||||| |||| ||||| | Sbjct 288533 AGGCTTCGTTCTGGACGGCCGAGGAGATGGACCTCTCCAAGGACGCTCACGACTGGGAAA 288592 Query 125104 -CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGC 125162 | | | || ||| ||||| | ||||| || ||||| | || || || |||| Sbjct 288593 ACAAGCTCAACGACAAC-GAGCGCCACTTTATCTCTCACATCCTCGCGTTTTTCGCCGCG 288651 Query 125163 TCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCC 125221 ||||| || |||||||| || || || || || || ||||| | ||| || | | Sbjct 288652 TCCGACGGCATCGTCAATGAGAACCTCGTCGAG-CGTTTCTCGAACGAGGTGCAGTGTGC 288710 Query 125222 AGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT-TGAG 125261 ||||| | ||||| || || |||||||||||||| |||| Sbjct 288711 AGAGGCGCGCTGCTTCTATGGCTTCCAAATCATGATGTGAG 288751 >seq101 Length=461416 Score = 114 bits (126), Expect = 2e-20 Identities = 285/427 (67%), Gaps = 17/427 (4%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||||||||| |||||||| ||||| || || ||| ||||||| |||||| Sbjct 403806 GCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTC 403865 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||||||||| || ||||| || || || | |||||| | || || || |||||| Sbjct 403866 AAGAAGCGCGGCCTGATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 403925 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAG 125611 ||| | ||| ||||| ||| | || || |||| |||| || | | || Sbjct 403926 GGCATGCACACCGACTTCGCCTGCTTGCTCTTCTCGC----ATCTCCG---CAAACGC-- 403976 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 | | || | ||| || || | || || ||||||| ||| || || ||||| Sbjct 403977 -CCGCACCCCGACACCGTCCGCACGATCATCACGGAGGCCGTGAAGATCGAGCAGGAGTT 404035 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 || ||||| | || || ||| | || |||||||||| || | ||| | |||| Sbjct 404036 CCTCACCGACGCGCTCCCCGTCTCGCTCATCGGCATGAACTCGAAATTGATGAACCAGTA 404095 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAA 125788 || ||||| || || || || || || || | | ||| || ||| ||||| Sbjct 404096 TATCGAGTTCGTCGCCGACCGCCTGCT---CGTCGCGCTCGGCAACGAGAAGCACTACAA 404152 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 | | ||||||||| || |||||| || || || || |||| ||||| ||||| || Sbjct 404153 CTCGTCGAATCCCTTCGACTTCATGGACATGATCTCGCTGCAGGGCAAGACGAACTTCTT 404212 Query 125849 CGAGAAG 125855 ||||||| Sbjct 404213 CGAGAAG 404219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||| || || ||||| | |||||| | || |||||||||||| | |||| ||||||| Sbjct 403349 AGGCTTCATTCTGGACCGCGGAAGAGATGGACCTGTCCAAGGACGCGCACGACTGGGAGA 403408 Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163 | | || | ||||| | || || || || || | || ||||| |||| | Sbjct 403409 ACAAACTCAACGACAACGAGCGCCATTTCATCTCCCATATCCTCGCGTTCTTCGCCGCGT 403468 Query 125164 CCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTC-C 125221 |||| || ||||||||||| || || || || || ||||| | ||| | | | | | Sbjct 403469 CCGACGGCATCGTCAACGAGAACCTCGTCGA-GCGTTTCTCGAACGAGGT-TCAGTGCGC 403526 Query 125222 AGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT-TGAG 125261 ||||| | || || ||||| |||||||||||||| |||| Sbjct 403527 AGAGGCGCGCTGTTTCTACGGCTTCCAAATCATGATGTGAG 403567 >seq379 Length=286460 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 || || ||||| ||||| | || | || | | | | || ||||| || |||||| Sbjct 264786 GGGCTCGTGCCCATGCTGCGCGCGTTCGATTCGACGGCGCGCTACGTGGACCAAGGCGGC 264845 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 || || || || ||||| | ||| ||||| | || || |||||| ||||| | || || Sbjct 264846 AACAAGCGCCCGGGCGCGTTTGCCATCTACCTCGAGCCGTGGCACCCGGACATCTTCGAA 264905 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 || |||| ||||||| ||| ||| ||||||| || || ||||| |||| || Sbjct 264906 TTCCTCGACCTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCGCGGGACCTGTTCTAC 264965 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC 97040 || |||||| | || || | ||||||||||||||| Sbjct 264966 GCGCTCTGGATTCCCGACCTATTCATGAAGCGCGTC 265001 >seq112 Length=929211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 |||| ||| | | | | ||| |||||||| || || ||||| || ||||||||| | || Sbjct 920710 CGGCCTCAACCATCGTCGAGAAGGCGATCTCGGCCCCGTGTATGGCTTCCAGTGGCGCCA 920651 Query 70105 CTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT 70164 | ||| | || || ||||||||||| || ||||| | |||||||| || || || | Sbjct 920650 TTTTGGCGCTAAATACGTAGACTGCGATACCGACTACACTGGTCAGGGCGTCGACCAGCT 920591 Query 70165 GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTC 70224 |||| |||| || ||||| ||||||| || || | ||| | | | | Sbjct 920590 GCAGGAGGTCATCCGCAAGATCAAGGAGGATCCAACGGACAGACGTATCATTCTTAGTGC 920531 Query 70225 ATGGAATCCTGCAG 70238 ||||||||| |||| Sbjct 920530 ATGGAATCCAGCAG 920517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054253429840